Gene detail

Detailed information of ENSNQRP00000017460.1 in Porites lobata

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLOBA · all data for this species · gene families

Sequence

CDS

Transcript

ENSNQRT00000021639

TGCTGTTTCAACGCCGCACAGCGAGCCTTGCAACAGAGTAGACATTTTGTTTTGTCCTGCCAGAATGAGGGCAGTGAAATTATATCATAAACAAATGGATGTGCCTTGGAAGTTATAAGTCATGATATTTCACGATTAAGGCCTCGGAAAGCTTCACGTTTGACCAAAAGAGGCTTTTGCCAAGTCCTATCCAACCGGCTGGACTCCAGAAAACTCAAGACAACGCGTTCGAGACTGTGATCGAAGCTTCGTTGAGGCTTCGAACGCTTCGAAAACGGCCGATTCTTGGAATTGGAGGATGCCAAGCGTTCCGCTTCCAAGCCCAAGCTATAATTCAACGGGGCGTCGCACTCCGTATTATACACATCCTGATATAAGAATTTATGAGTTGAACCGGCGTTTACAACATCGCCTCGAGGATGCAGACAATGTATGGTGGGATGCATTTGCAACAGAGTTTTTTGATGATGACGCTACCCTGACATTGAGCTTTTGCTTGGAAGATGGGCCAAAAAGATATTcaaTAGGACGGAATCTAATTCCCAGGTACTTTCGAAGTATATTTGAGGGTGGAGTAAAAGAACTGTATTACCACATTGTGCAACCGAAGGAGTCATACCACAACAACACAAGTACAATAACTCTTGATTGTGAAAATACAACCATGATTACACATCATAAAACACCAGTCTTTACAAAGGTATGCACAGAGGGCCGCCTTTTACTGGAATTCACCCTGGATGATCTCATGAGAATACGAAACTGGCACTTTGCTATTAGACATTACACAGAGATGATTCCTCGCAATGTTATTGTTGGTGCCCAGGACCCAAACTTTCTGGAACAGTTATCAAAAAATATCACCAGACAAGGAATGACCAATGTTACTCTTAATTATCTCAGGCTCTGTGTTATTCTGGAGCCCATGCAGGAACTCATGTCACGACACAAGACTTACAATATGAACCCCAGAGACTGTTTAAAATCCACACTTTTCCAGAGATGGCAGCCAATGTGTCCCCCACCAGATTATCAGGGTGAGATGATGTGGCAACCAAATACTCCAACCACTCCAGGATCCCCCTTTCCTAAACTTCTTGAGAGAACATTGACTGGGCAGCCTGCTTCAAGGAAAGCAGAAACTCCGCGTCAACCAAGAACGAGGCGGAAACGTAAGTCAACAAATGCAAATTCATCGGCACCCAGCAGTGGTATGAACAGTACGTCAGGTAAAAAGAAATCGCCCAGCACTTCGGGGTTCACACTAGCATCTCAGGATGTCATGGTTGTTGGCGAGCCTTCTCTGATGGGCGGAGAATTTGGTGATGAAGACGAACGGCTTATTACTAGATTGGGTTTTGAAGATGGTGAAAGCAGTTTTCCTGACTTTTCTTTGGCTGGAGAACACACAGTATGATGCAAGCAATGGTGTTGGTGATGAAGGCGACTTTGGTGGTAGCCCCATGAGCGGAAGCCCAAGTCTTTGGAGTACAGATCGTAAACCGAACCAAGAAGACAGTACTGGAGAATAACAAGGTTTATCAGAGAAATAATCCCAAGATATATATCCTGTCGTTGCCTGCCCTAGAAAAGCTTTGTCTGAGGACTTTTCGGGACTGGTACATAAAGGCCACTATGGACCACTGGCCAAAGTTTGTTAACTTTCACTCTCCGTTTGACAGAgtttaaatgtcaaattttatgAGCCAGGGTTTAAAGTTATTTATGCTGTTTCTTATGGTATTTTTGAACTGGCTGGCTACCTGTTATATTCACTTTTTATTCATGAATGATACACAACCATAAAGTATTTTGCAtcttctttttttgaaaaatagaaaaccACGAAGTGATTCGTTCTGATGTGGTTAGAAACGACAGCTCAGCCAGGGCTTCACGAGATAACTTACTATTGTCTCTAAGAAGAGGCAAGTGTCACTTCTGAAAATTATACACATACATTTTAAAGGGAAAAGGCGTTATCCCAGTCGCGCTTAAACATTGCTTACTTGCTGAATAGAGGCGCCATTTAGGCGTTTACACTGAAGTATGTTGTGATCCGAACAGTGAAATACTCCTACCATTAAAACTCTTGAAATAGCGTTCTTGTTTCTTGTAGAAAGGTTAAACGGTAGGGGAAACAACCGAATGGTGGAAAGTGGAGAAAACCTTTTCCTGTTCTCACGTACTTCAGCCTCTGGAAAGGGGTCTCTGAAGGGAAAGTTCTTAGATACGTACACTTGACTGAATAGTAGGCAGGCATAATTTGCTATATTCCCGGAATTCTGCTATGCTTTATCGTTCATTGTTCATGGCGAGGTTTCTCTGAGTACTGTAGGTATGATCATTTCGGACCATCTTAGTCTACGGCAAAACGGGCGACTAAAACTTGCATTGCAGAATTGCTGcgaaacgt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17916 all species →	LID	LIM interaction domain (LID)	Domain	Interproscan
PF01803 all species →	LIM_bind	LIM-domain binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041363 all species →	Domain	LIM interaction domain	Interproscan
IPR029005 all species →	Family	LIM-domain binding protein/SEUSS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10378 all species →	LIM DOMAIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0030274 all species →	Molecular Function	LIM domain binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24143	LDB2; LIM domain-binding protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.