Gene detail

Detailed information of ENSNQRP00000022361.1 in Porites lobata

Genomic Location: Porites_lobata_contig_40:2992233...3012851
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSNQRT00000027563

TCTGAGGGCAAGCTGGGAGATTTTTTCGTGTGAATGCACACAAAGATAAGTCCATTGACAAAGAAGACCGCTGTCAGAAATTCAACATGGCGGCAAACAGTTCGGAGGGTTTTCCGCCTTAATTTCAACTGAAAGGTCCTTTTATAAAAAGCTTGATTCAcgataatttattatttgagCTCTAGTCAGGATGGATGATTATGGAGAAGATGTTGGATGGGATGAAGCAGCCTTAAGCCCATCGGACGAAAGGAGAGACAATGAAGTTATTATACAAGAGTGTATGCAGAACTTTGCAGCAAAAGATTTTATCATGGAGCCAGATATTTTTAACAACATTAGAAGGTATTACCACGCAGGAGGAATTCCTGAAGAAATGGTGAAGCTTTTATCAGAGAATTATTCTGGAATAGCTCAAAGTACAAATCTCCTTGCCAACTGGTTGATTGTAACAGGAGCCAAAGTACCTGATGTTGAGCAGATGGTAGAAAACCACCTTGAAACTCTCATTATCAAGCATTTCGACCCAAAGAAAGCTGACTCTATCTTTTCTGCAGAAGGAGAGACTCCATCTTGGTTAGAAGATATGATTGTTCATCAGACATGGAGATCTATGTTTTATAAACTAGCTGAACAACATCCTGACTGCCTGATGCTTAACTTTACCATCAAGCTGATTTCTGATGCTGGTTATCAAGGAGAAATCACCAGTGTATCAACAGCTTGTCAACAGATTGAAGTGTTTTCACGTGTCCTCAAAACATCTGCTTGCAGTTTCTTAGAGGAAGGAGAACAGACATTTGAAAACAACTTGCCAGAATTTTCTaaaaaagttTGCTATGGACAACACACATACTTGTATGCTCAGTGCTTGTTGAATCACATTGCTCAAAACACAGATGGAGGCAATAAATTAATAAGAATTAgtcaagaacttcaaaaaacagcagttgaaagTGGTCATGAAGTAACAGAGATTACCCTGTCATTGAATGGTGCTTCAGCTTATCCCAGAGCATATTCAGCCCTTTCTTCCATGCTTGGAAAAAACTCTCTTAACCCAGGGGATATCACTGTGCTGTACAAGTTATTTAGCAGTTCTCAACCTCCTCCCTGTGCACTCATTAGGGTGCCACAGTTTTTAGaGCTTCTTCTAGAAGCGTTATTCAAGCCTGGCCAACATTTGAATCCAGAGCACAAGTATAAATATGTTTACCTGCTGGCGTATGCTGCATCTGTCCATGAAACATGGATCGAGAATGAAAGAGCAACACTCAACAGAGATGAGCTTAAAACGACTTCTCAGGCTTTGGACAAAATCCATTCATTATGTGTACAGGAAACCAAGAAAGGCTCACAGTTGTTAGCTGAAGTTGGTGTCCTGTTCCATTGTATAAGGTTTCCTGTGGTGGCCATGGGTTTGTTAAAGTGGGTAGACTGTACCGTGTCTGACCCATCATTCTTCAAGCTTCTCACTGACTCAACACCAGTCCACTTGGCTTTACTGGATGAGATCAGTTCCTGTCATGTTCTTCAGCATCGCTTGGTACTTAACGTTCTGATCCGACTGTTTGAGTCCCCCACCCCGCTGGATACTTTAGTGGAGCTCGAGTTCAAGAAAACAGTTCTGGATCGAATGATACATTTGTTGAGTAGAGGTTATGTGGTTGCTGTCATCAGTTATATTAACAGCTGTTTGGAGAAGCAAAACACGGATAATTCGCTCATCAGGCACTTTGTTACTGAGGTTCTTGAAATGATTGCTCCTCCATACTCACCCGAGTTCATCCAGCTTTTCCTTCCCATCGTGCGCAATGAGGAGATCACGGGACGTTTGCGTAGTGCTGATCGAACAGATGATGTTTCTCTGTTTTTAGCTCATTGTGCTCAACAGGCGGGAGTGTAGTTCAAACCCGCTGACACCACGGCAATCACCCTACAGATTTGAGCTACGCCAGAGTCTTGACACCTCTGCACGGCTGCATGTAACACtggctagcctgttccaggcgttcagatagttgAGCGCGGGAGAAGaattcacgaagaaaaaaaaaaacgaggggggactagagggggaaagggagAGGGAACTCTCGCTCTCGCCCCCCCTCGTCCCCCCCCCCGTTTTGCCGGTGTACAacttaactcgctccccactgaccgccgcgctctactatctgaacacctggaacaggctaaacgCTGGCAGATCTAATTTCCAAtaaccgccatctttgcacgcgcctAAGGACTAATGGGAtgaaagcaatgtcacgtggtttctcggagggcaaacaagtgataaaagcTGCCAGTCGAAGAAATCGctgtcgagtttgtttattctagacaacagaaaatgagGAACTTTTTATCTTAATGGCGATGATGGTATattatgggtggaagtgatGATTGCTACTTTTTTGAATGCAGTAGTGACGTTAGATTTCTTCACAGCAAGTCTAAAACGTCGTCTTGTGTTGAGAGAACGAACGCGACCGCGATCAGTCGTATTGGAAAATTTTATAATTTGTTTGCCTCTTGAAATACCACGTAACactgcttttatcccatcaatcctaaagcgcgtgcaaagatggcgagTATATCATGAATAAGGTCTTCTTCAGATGAACCCTCGCTCCCAGGGTTCTCAGGGGACGGAAAGAAGAGAGACCCTGGGTACGAGGCAAATTTTCTGCCACTATTTCCTTTGTTATCCAAAATTCCCCAATTTTTGCTCAATATATCCAAACCTAAAAGAAACGTTGTATGCCACACACCTGAAATCATGTGAAAGATACCGTATacccatttttaaaaaaatatatgacgtaaaaaaaaagtcTGTATACCTTACACCCCCAAACCGTCGGCCAAGCTGACTTTCTAGTACGGT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004895 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04858 all species →	TH1	TH1 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006942 all species →	Family	TH1 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12144 all species →	NEGATIVE ELONGATION FACTOR D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032021 all species →	Cellular Component	NELF complex	Interproscan
GO:0034244 all species →	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15181	TH1L, NELFD; negative elongation factor C/D	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.