Gene detail

Detailed information of ENSNQRP00000027602.1 in Porites lobata

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Sequence

CDS

ENSNQRT00000034161

ATGGAGGACGATGCGGTTCCTACGATTGAGGAACTCAAAAAGCTTAAAGTTGTGGATTTAAAGGCACGGCTAGCATCCCTTGGACTTCAAACATCAGgTCTTAAGGCGGAACTAGTGGCGAGACTTCATAGTTACTTCTTGTCGctcCAAAAAACCCAGCAGTTAGTTCAAGTTGAAGAAAGTACAGATCATAGAGAACCTGGGTATCCATCTCAACCTGAGCCTAGCTCCACACAATCAGCATCCGTCAGTGATGAAAAAGAACAAGTTAAACCTCAGACAATTCCAGCAACAGAAACCCCTGCTCCATTTTATCAGTTGGAACAACATTATCCTGTGGTAGTCATGAAAACAGAGGATGCACCACTTACAGCTCATGTACCAGTACTAATACCCGAAGAAAAACCTGCTATACAACAAACTGCCACAGGTAGTGAAATGCCTGTTTTGCGTGAAGAGCCTGGTTATCAACCGCAACGTGCAGATGTGGATGTTGCAGATCAGCAAGTTGAAGTTCATAATGTTGATGAAGGTGATCAAGCACAGAACATTGTATATTCTCAGGAGGAAAGGGACAATGAAGATTTACCCGAACCAGGAGATGCAAGTGAACAAATGCATGAGCCAACTCAAGAGGACATTTCTGAGACTCCTGTCACTGAGCAGCAAGTAATTGCCCCTGAGTTAAAGGACAATCTCCCAGCACAAGTTTCCTGGACACAGGAGACTACACCAGTGGGTGTGCAAGAAACTGATGAATTTTACATTTCAGAGGAACAAGACATTCCACAAGCAAACAGTGCTTATGCTGGGGAATATCGTGAAGAATCCCATGATGGTGATATTCTGGTGTCTTCAGAAACCCGTGAGCCATGGGTTATGGTTGATTATCCTCCAGCAGAAGAAGTAAAGGAAAACCGTTTTCTGCCTCAGGACAATTTGTCTGCTCCTGAACATGTGCAAATGGAAACAACAAATGATCAACTTATGCAGGAAATACAACAACCACAAATGCCGGAAGAAGCTGAACGCGAGTACCATAATGACGTTGAAGGTGTAGAAAATGAAGAGGTTGATGAAACACCAGTTGTTGAGagcaaagaaaaaaagaaaaggaagaagaagaagaagagaaggaaGAGGATAGAGTTTGTTCAAGAACAGCCACATGATGTTGAGGAAACTGATGATGTTGAGGTGGAATATGTGACTGAATCCCTTAGTCCACATGATCCTAACTACAGAGCTTTTGCTAAGATATTTGAGGCATTCAAGTTAACTGACCCTGTCAAAGAAGATGCAACACAGAAAAAGGCTGACCAAAAAGAAGAAACTGTCGCAGCAAAGAAAACTGAAGCAAAAGATCATAGTATggataaagatgatgatgatgatgatgatgacgatgatgaagaTATGGTGAAAAAATCTGAAGATGATCAACCTAAGCTCTCCAAgaagaaactaagaaaaatGAACAGGCTTAGTGTGGCTGAACTAAAACAGTTGGTTCCAAGACCCGATGTGGTGGAAATGCATGATGTAACTGCTCAGGATCCTAAAttccttgtatttttaaagTCATGTCGTAACACCGTCCCAGTCCCCAGACATTGGTGCTTCAAAAGAAAATACCTTCAGGGTAAAAGAGGTATTGTGAAGCCACCATTTGAACTGCCTGAGTTCATCAAGagAACTGGAATCATGGAAATGAGGGAAGCAATGCAGGAAAAGGAAGACCAAAAGACCATGAAAGCAAAGATGAGAGAAAAGGTCAGACCAAAGATGGGAAAGATTGACATTGACTATCAGAAACTTCATGATGCTTTTTTCAAATGGCAAACAAAGCCTAAGATGTTAATACATGGGGAACTTTATTATGAGgGAAAGGAGTTTGAGACAAAATTGAAAGAGAAGAAGCCAGGAGACTTGTCAGATGAGCTTCGGACAGCCCTTGGGATGCCAATTGGCCCTAACAATCAGCTAGTTCCGCCGCCATGGTTAATTGCCATGCAAAGATATGGACCCCCGCCATCATACCCCAGCTTAAAAATCCCTGGATTAAATGCACCTATTCCTGAGGGTGCATCATTTGGTTACCATGCCGGTGGCTGGGGTAAGCCTCCTGTGGATGAACAAGGCAAGCCACTGTATGGTGATGTGTTCGGTATCCAGCAGCAGGAGGCTCCTGTGGTAGAGGAAGATGAACAGATTGAGAACCAACCTTGGGGCGAGCTGGAATCTGAGTCAGAAGAGGAATCCGAGTCAGAGgAAGAATCGGAAGAGGAGGAAGATCAAACAGGTCTCATTACACCAGCTGATACTGGACTTATCACCCCGAGCGGTTTGACATCCATTCCAGCTGGTATGGAAACACCAGACATGATTGAACTACGTAAACGAAAGAATATCGAGGAAGCCATGGAGGTTGGTTCTGAACAGCAACCGCTGTACACCGTGTTACCGGAAAAGAGAATCAGCGTGGGCGCGGCTATGATGGGATCTGCGCATGTGTACGACATGACGTCGGCAGCTGCAGGTGCTCAAAGAAAAGCTGGAGCGCCTCTGACTGAGGGTGTCGAGGTGGCACTGGACCCGAGTGAGCTGGAGCTGGACCCGGCGGCTATGCAGGCCAGATACGAGGAGCAGCTTAAAGAAAGAGAAAGCCAATTACAGAAAGAAGACCTGAGCGATATGGTGGCGGAACATGCAGCTAAACAAAAGAAACGAAAAAAAGCGACAGACAGCGGCAAATCTGctaaaaagtacaaagaatTCAAGTTCTGA

Transcript

ENSNQRT00000034161

CTTTTCATGAGCTGAGTTTGGCTTCCTTCTCCACAGTCAAACATCCAACAGCCTGTCTCATGTCTCAGAATTACGCACGATGCTCCCCGATACGGAGCTGGATAACAAGATCCAGTACCAAGAAAGTGAATCTCCATTTTGAGGAAATATTTGTAGTTTCATCTCATAATTAATGGCGAGTTTGTGCGGAGTTTGTGCACAAGTATTGACATTTTTCGTCAGGCGCTAGCTTTGTCGGATCCAGTCCTAATTATGATGGACCCATAATCCCTTGCGGTGACGTTCAGCCAGCATCCAAGATGGAGGACGATGCGGTTCCTACGATTGAGGAACTCAAAAAGCTTAAAGTTGTGGATTTAAAGGCACGGCTAGCATCCCTTGGACTTCAAACATCAGgTCTTAAGGCGGAACTAGTGGCGAGACTTCATAGTTACTTCTTGTCGctcCAAAAAACCCAGCAGTTAGTTCAAGTTGAAGAAAGTACAGATCATAGAGAACCTGGGTATCCATCTCAACCTGAGCCTAGCTCCACACAATCAGCATCCGTCAGTGATGAAAAAGAACAAGTTAAACCTCAGACAATTCCAGCAACAGAAACCCCTGCTCCATTTTATCAGTTGGAACAACATTATCCTGTGGTAGTCATGAAAACAGAGGATGCACCACTTACAGCTCATGTACCAGTACTAATACCCGAAGAAAAACCTGCTATACAACAAACTGCCACAGGTAGTGAAATGCCTGTTTTGCGTGAAGAGCCTGGTTATCAACCGCAACGTGCAGATGTGGATGTTGCAGATCAGCAAGTTGAAGTTCATAATGTTGATGAAGGTGATCAAGCACAGAACATTGTATATTCTCAGGAGGAAAGGGACAATGAAGATTTACCCGAACCAGGAGATGCAAGTGAACAAATGCATGAGCCAACTCAAGAGGACATTTCTGAGACTCCTGTCACTGAGCAGCAAGTAATTGCCCCTGAGTTAAAGGACAATCTCCCAGCACAAGTTTCCTGGACACAGGAGACTACACCAGTGGGTGTGCAAGAAACTGATGAATTTTACATTTCAGAGGAACAAGACATTCCACAAGCAAACAGTGCTTATGCTGGGGAATATCGTGAAGAATCCCATGATGGTGATATTCTGGTGTCTTCAGAAACCCGTGAGCCATGGGTTATGGTTGATTATCCTCCAGCAGAAGAAGTAAAGGAAAACCGTTTTCTGCCTCAGGACAATTTGTCTGCTCCTGAACATGTGCAAATGGAAACAACAAATGATCAACTTATGCAGGAAATACAACAACCACAAATGCCGGAAGAAGCTGAACGCGAGTACCATAATGACGTTGAAGGTGTAGAAAATGAAGAGGTTGATGAAACACCAGTTGTTGAGagcaaagaaaaaaagaaaaggaagaagaagaagaagagaaggaaGAGGATAGAGTTTGTTCAAGAACAGCCACATGATGTTGAGGAAACTGATGATGTTGAGGTGGAATATGTGACTGAATCCCTTAGTCCACATGATCCTAACTACAGAGCTTTTGCTAAGATATTTGAGGCATTCAAGTTAACTGACCCTGTCAAAGAAGATGCAACACAGAAAAAGGCTGACCAAAAAGAAGAAACTGTCGCAGCAAAGAAAACTGAAGCAAAAGATCATAGTATggataaagatgatgatgatgatgatgatgacgatgatgaagaTATGGTGAAAAAATCTGAAGATGATCAACCTAAGCTCTCCAAgaagaaactaagaaaaatGAACAGGCTTAGTGTGGCTGAACTAAAACAGTTGGTTCCAAGACCCGATGTGGTGGAAATGCATGATGTAACTGCTCAGGATCCTAAAttccttgtatttttaaagTCATGTCGTAACACCGTCCCAGTCCCCAGACATTGGTGCTTCAAAAGAAAATACCTTCAGGGTAAAAGAGGTATTGTGAAGCCACCATTTGAACTGCCTGAGTTCATCAAGagAACTGGAATCATGGAAATGAGGGAAGCAATGCAGGAAAAGGAAGACCAAAAGACCATGAAAGCAAAGATGAGAGAAAAGGTCAGACCAAAGATGGGAAAGATTGACATTGACTATCAGAAACTTCATGATGCTTTTTTCAAATGGCAAACAAAGCCTAAGATGTTAATACATGGGGAACTTTATTATGAGgGAAAGGAGTTTGAGACAAAATTGAAAGAGAAGAAGCCAGGAGACTTGTCAGATGAGCTTCGGACAGCCCTTGGGATGCCAATTGGCCCTAACAATCAGCTAGTTCCGCCGCCATGGTTAATTGCCATGCAAAGATATGGACCCCCGCCATCATACCCCAGCTTAAAAATCCCTGGATTAAATGCACCTATTCCTGAGGGTGCATCATTTGGTTACCATGCCGGTGGCTGGGGTAAGCCTCCTGTGGATGAACAAGGCAAGCCACTGTATGGTGATGTGTTCGGTATCCAGCAGCAGGAGGCTCCTGTGGTAGAGGAAGATGAACAGATTGAGAACCAACCTTGGGGCGAGCTGGAATCTGAGTCAGAAGAGGAATCCGAGTCAGAGgAAGAATCGGAAGAGGAGGAAGATCAAACAGGTCTCATTACACCAGCTGATACTGGACTTATCACCCCGAGCGGTTTGACATCCATTCCAGCTGGTATGGAAACACCAGACATGATTGAACTACGTAAACGAAAGAATATCGAGGAAGCCATGGAGGTTGGTTCTGAACAGCAACCGCTGTACACCGTGTTACCGGAAAAGAGAATCAGCGTGGGCGCGGCTATGATGGGATCTGCGCATGTGTACGACATGACGTCGGCAGCTGCAGGTGCTCAAAGAAAAGCTGGAGCGCCTCTGACTGAGGGTGTCGAGGTGGCACTGGACCCGAGTGAGCTGGAGCTGGACCCGGCGGCTATGCAGGCCAGATACGAGGAGCAGCTTAAAGAAAGAGAAAGCCAATTACAGAAAGAAGACCTGAGCGATATGGTGGCGGAACATGCAGCTAAACAAAAGAAACGAAAAAAAGCGACAGACAGCGGCAAATCTGctaaaaagtacaaagaatTCAAGTTCTGAAGGCAGGGATGAAACTTGCTTACAACACATTTGTATGTAAATAGCAATATACTAAGCTGTACGAGTTCAGAAACTGCCGTGTTGTGATTTCACAATGCTATCCTCTTCCTGTAAAACGTACTTCAAAAGCTGTTTGTGTTCACTGTCAAAGCGTCAAGCTAGATATTAAGATTTATTTTTAACTCCAATATGTCAAGATTCGGGCCTCTTTTATATGCGTTGTACTAACGAACTCACTTACAGTCTTTAAATCGTGCATTCAGTGAATAAAATcctttcacagttcttctggtGAAAATGTTCCGATTGGACTCATTGTTTTTGTTGGATTCTATAAAACATGCTGTAAGCACTATGGAGTATTGTTCATGGTTTATTTacgcaatagaccacactttctatgggttttcTATGGGTGAtgacccacgcgggatgttgggagaaatCACGTGTTCTTCCAACACTctaagtgggttatcacgccggtaaacccaaaGAAAGtgggtctattgcttttattaaataactttaagttttctatgagttaaCCGGCGCAATAAACcatatgtttttagccaatcagaacaggCGTACTATCTAGTTATTTTATAAGTTGTTGTTATTAATTTCATACCCTCTGCAGGGGTCTTCAGTATGGTGGATAACGTTATcgactggataaatctctattccgtggatagcgcaattagttTCCTCAATATTTATCCGCAGGATAGTgttttatccagtggatagcgctatccaacgtttgaacaacggGAGCCTGCAGATGTATATAACTCAACCGATCGACGCAACAGCACAGTTacttcaaaaacaaacaacttcATATATCTTAACGTCTCAACTGCTCCAATTACAACACTCTAAACATGTGGTTTAACAACCTTTACTGCCACTCATTTTTAACAAGATTACAATAGAATATCTGGTATAGTGATAGTAAACACGAGGAAAAAATATTATAGAAATACAACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04046 all species →	PSP	PSP	Family	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan
PF04037 all species →	DUF382	Domain of unknown function (DUF382)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052584 all species →	Family	Pre-mRNA Spliceosomal U2 snRNP Complex Component	Interproscan
IPR006568 all species →	Domain	PSP, proline-rich	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR007180 all species →	Domain	Domain of unknown function DUF382	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12785 all species →	SPLICING FACTOR 3B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12829	SF3B2, SAP145, CUS1; splicing factor 3B subunit 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.