Gene detail

Detailed information of ENSNQRP00000037573.1 in Porites lobata

Genomic Location: Porites_lobata_contig_92:120425...141953
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSNQRT00000046755

ATGGCGGACCCGTTCATCGGTTTCGGTGAAGGGATTCCAGTCTTTGAGGACGAAGAACTTCATGAATTGGATCCAACGTTGACAAATCTCAAAGAAGGAGAAACTTACGACCAGTTAAATGACGACACATTTGGCTCCGGTGCTTTAGAGGATGACTGGGAACTTTCCCACAGGAAGTTGTCAGGTTTGCATTCGGAAGGGACACATGAAACTAAATATGATGAGTGGCTTAAGAAGAAAGGGTTTGAACTCCAGTCAAGTGATCTTagattaacaacaacaaaagagtTGAAAATAACGGGAAAGGAAGATCCTGAAGATGAATTGGACCGAGAAGAGGAGATTCTTGAACAAAACTTGACCAAACtggttgatgatgatgatgctgactCCATACCCATCCCCAGAAGGTCCAAGCACAAGGATATCAAGCACCCATCAGGTGTTAATCCAGTTTGGGATGGTACTTCACCACTGTCAAGTCCTTCATCAACAACTTCAATACATGATCTGATCTCACCATCTTCTAACATCTGGGGATCACCCTCTAAACTGGAtaaagaaaatgcaaataaagGACCAGTCAATACTCGACAATCTCCACTGGCTGAATTACTGAAGGCAGAAACTGAGAGGAAACGTAGACTGAGGAGACCTTTCTCACCAGCATTTGAGGATGATGCCATAGTGACAGCCATACCACCCCCAGGGCTGATACCACCAAGCCGTTTCATGAAAAAACCACCCCCAGTAAATGCTATTAAGCTGGAGGACCTTGAAAAGGAACTCACTGGTGATAGCAGTACCCCTCCCCAGCAAGTGCCAGAAGGTCCAAAACAAACCCCTCGCAAGACAATGATTGGCCAGCCACCGCCTGGTATCCCCAGACCAATGATGACACCTCCTGGATTACCATCTCCTGCATCTGCGAGGATGCATACTCCAGCAAGGCCCCCTCAGATGTTTCAGCAGAGACCGAGTCCTTCCAACCACAGTATTCCTGGAATGCCTGTTATGCCTGGAATGTCTAACATGCCTGGAATTCTTGGTCCTGGTCCAGGCCCAGGCCCTCATATGATGAGAACTCCAAGGACACCTTTTCCAAGGTCTCCATTTCCCATGATTCACTCAGACCCTGGTCACCTAATGTTACAAAGAGGCATGCTGAACTTTCCAGTGAGTCCCCAGCACCCAAGATTTGCCAGTCCTCAGTTTCATAACAGAAGATTTCCAGACCCACGGCAGAATTTTCCTAGACAGCAGTATGATAACCGTTTCTTTAATGATAATCGCTCACCCAGACAGCAGGATAGAGGTGAACATCAACACCAGTTTACTGACTTGGAGAGGAAAATTCACAACATCCTAACAATGGCAGAAAGTGCCCCAAGAAAGGATGATCCATATGCTGGGCTCATGACTAGAAGAGAAAAGGAATGGTTGATCAAGATCCAGTTAATTCAACTCACTAGTAATGAACCTGAGCTTGATGATTACTACTTCCAGacgtacacaagaagaaaagCTGCTAAAGAACGTGAGAAGCAGAGCGAGGGTGTTCAGTTGCGGCCCAATATTGAAGACAACAGGAAGAGTAATGAGACAACCAAGATGGCATTACCACAGTTTGAAAGGGAAAAGAAGACCTACACCCCAAcGCATTACCAAGGAACTCTGGGAAAAGTGTCTTCATCATCTGTACAACATCCAAGGCAAATGGTGGATTTAATGCACATCACTAAAACACCTGAACAGGGTTATGATCATCTGTTGAATGTTGAAAGTTTAGACAAAAAGTTAATTCATCTCGAGGAAGAGGAAAGaaaTGAGCTTTTGAAAACTAGACAACTTGCTGTTACAAAGCTATTCAATCTCTTGAAACTTTCTACAGATGACACTACAAAATGTGATGATGAATTCTTTGTACAGTTTCTATTGGTTCTTAAAGGAAAACGTCTTCTCAGTAGATGTCTACCAGTCTTTAACACGTTTGGTTTGGGAATTTTGAGCTTGTTACTGGGAAGAGCGGCTATTGTTTCCAACAGCCTAACTGAATCAGATGATGAAATAAGGAAGTCATGGTTAAATATTGTTTCGCGAGTTGCTACTGAATTTCAAGATGTCCCTGTGAAGCAGTTAGGAAGAAACCTCGAAGCAGCTGACCGATTAGTGGCTTTGTTGTCCACCTGCACTGATCTCCAGACCAAAGCACTACTACAGGAACACTTAAGGTTTGCCATTAACCAAGTCTCTGTTACGTTTCTTGTATGA

Transcript

ENSNQRT00000046755

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004010 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for ENSNQRP00000037573.1 in Porites lobata.

InterPro

InterPro term	Type	Description	Source
IPR039900 all species →	Family	Pat1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21551 all species →	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12617	PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.