Gene detail

Detailed information of ENSNQRP00000038242.1 in Porites lobata

Genomic Location: Porites_lobata_contig_106:1039986...1063091
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSNQRT00000047612

ATGGCTCTGCTACAGtgGCGCAGGTTCAACTTTTTTGACAAGGAAATTCTCAAAGACCCCGGAACAAACCAACCATTCTCCGCGCTAAAGGATGTTGACATCACATCTTGTACAAGTGGAAGAGGGCAGTTAGTTATCGGAGATTCTGCTGGCTTTGTACACTTTTTGGGTCGTGATTTAACCATCACATCATTCCAGGCCTATGAAATCCGTGTGTCACATTTTTATCAATTAAAACAGCAAAACTTTTTGTTCACAGTTGGGgAAGATGAAGTTGATGGAGTTGATCCTATAATTCGAGTTTGGAATCTGGACAAGATTGATAAGTATGGCAATCCTGTTTGTTGCTGCATGCAGCGTCTTATCCCAGGAAACAAGCCAGTTCCGGTGTCCTGTCTTGCTGTTATGGAGAATCTCACTCAGATGGCTGTAGGATTTGCAGATGGCACCGTTCTTGTTTACAAAGGAGACATCACAAGAGACAGGCACACAAAACAGCGAATAGTGCATCATGATAAGCACCCTGTGACAGGACTTGCCTTCAAACAGACCAGTGACAGTGTAGTACTGTTTGTGGTGACAACGGAGGCTGTTTTATCTTATAACACTTCAGCAAAAGACAAGAGGGAAGTATTAGATGCTCATGGTTGTGAACTTAGATGCTCGGTTATGAGTGATGCGTCACAGGAAAACCAGTTTATTGTGGCTCGAAAAGAGGCACTTTACTTTTATCAGGTTGATGGACGTGGCCCTTGTTTAGCATTTGAAgGAGAGAAGCAAATGGTTACATGGTGGCGTGGTTATCTTGTCGTAGTAAGCCAAGATAATAAACAGCTTCAGAGACCAGCAGTAGGAGGCAATTCTCAACCACGAAATATGAATATTGTTACTGTATATGACAttcaaaacaagtttattgCTTTTACAGGGACCTTCCAGGGAGTAATTGATGTCTTATGTGAATGGGGAAGCTTATTTGTcataacaatggaaaataagatttttcagtTAGAAGAAAAGGACACGCAAACCAAACTAGAAATTCTTTTCAAGAAGAACCTCTATGCAATGGCAATCAGTTTGGCAAAAAGTCAGCACTATTCTGATGGACTGATTGAAATCTTTACTCAATATGGAGACCACTTGTACAGcaaaggAGATCACGATGGAGCCATAAAACAGTACATCAAAACCATTGGCCATTTGGAACCATCCTACGTCATTCGGAAGTTCTTGGATGCACAAAGAATTCACAACCTCACCGCTTATCTCCAggcACTGCACAAACAAGGACTGGCCAATACAGATCATACTACCCTGCTTCTCAATTGCTATACGAAGCTCAAAGACGTCTCCATGCTGGATGAGTTCATCATGACTGATAAGGAATTAAACTTCGATGTGGAAACTGCAATCAAGGTTTGCCGTCAGGCTGGATATTTCAAACATGCCGTGTACTTGGCTGAAAAATATGATCAACATGATTTATACTTAAAGATTCAACTGGAGGATCTCAAAGATTATCAAAGAGCTTTGTCGTACATTGGAAAACTAGATTTTTACGAGGCCGAAGACAATATGAAAAAGTATGGTAAGAGCCTCGTGAATGCTGTGCCAGATGAAGCAACGAAGCTATTAAAAGTCCTTTGTACAGATTACAGACCCCAGCGCCTGCAGGAACGTGCAGTTTCTGGTTCAGTTACCCCTGTTACTACTGGTGTATTTCAATCCATGACAGCTGCGTTAGATCCAGTCCCGAGTGTAGAGAGGAAAATCCGCAAGGCACGCGCCGAAGAGTTCATCCATATTTTCGTACATCAGAAGGCTAAGCTGATTGAATTTCTTGAGCACATGGTGCAGGTGCAACCACACTCATCAACCAACCTTGTGTACAATACTCTTCTTGAACTGTACCTTAACGACGCAGCACGTCAGAAGGATATAGAGGCACAAGTTGAACATGAACGCAAAGCCCTTGATTTGCTGACAAATTTGGAGGCACGCTACGATATCGACCACGCCCTTGTGTTGGCACAGATGCACCACTTCAAAGCTGGAATTTTATATCTGTATGAAAAAGCCAAACTttaCCAACAAATACTTCATTACCACATGGAACAGAACGAGTACGGTCACGTGATCGACACGTGTAAGAAGTATGGCACTTTAGACACAAGTTTGTGGGTGCAGGCTCTCTCATATTTTGCCCGGCGGGAAACAGATTGCAAGTCCCAGATAATGGAGGTGTTATCTCATATCCTTTTATAA

Transcript

ENSNQRT00000047612

ccGCTCCTTCAGTGGTTCGTCTGCGCGTGCTTTGCGTGACTTCACCAAATTTACGCAATCTGTCAATCAACTGGTCCAAATATGGTGATTACCTCTTGTACCCATCACACCTTTCGGTTCAAGAAAACAATATGGCGGAACATAGACGAGATAACCCTTAGAAGGGCTGTGTGTACGCCATGGCTCTGCTACAGtgGCGCAGGTTCAACTTTTTTGACAAGGAAATTCTCAAAGACCCCGGAACAAACCAACCATTCTCCGCGCTAAAGGATGTTGACATCACATCTTGTACAAGTGGAAGAGGGCAGTTAGTTATCGGAGATTCTGCTGGCTTTGTACACTTTTTGGGTCGTGATTTAACCATCACATCATTCCAGGCCTATGAAATCCGTGTGTCACATTTTTATCAATTAAAACAGCAAAACTTTTTGTTCACAGTTGGGgAAGATGAAGTTGATGGAGTTGATCCTATAATTCGAGTTTGGAATCTGGACAAGATTGATAAGTATGGCAATCCTGTTTGTTGCTGCATGCAGCGTCTTATCCCAGGAAACAAGCCAGTTCCGGTGTCCTGTCTTGCTGTTATGGAGAATCTCACTCAGATGGCTGTAGGATTTGCAGATGGCACCGTTCTTGTTTACAAAGGAGACATCACAAGAGACAGGCACACAAAACAGCGAATAGTGCATCATGATAAGCACCCTGTGACAGGACTTGCCTTCAAACAGACCAGTGACAGTGTAGTACTGTTTGTGGTGACAACGGAGGCTGTTTTATCTTATAACACTTCAGCAAAAGACAAGAGGGAAGTATTAGATGCTCATGGTTGTGAACTTAGATGCTCGGTTATGAGTGATGCGTCACAGGAAAACCAGTTTATTGTGGCTCGAAAAGAGGCACTTTACTTTTATCAGGTTGATGGACGTGGCCCTTGTTTAGCATTTGAAgGAGAGAAGCAAATGGTTACATGGTGGCGTGGTTATCTTGTCGTAGTAAGCCAAGATAATAAACAGCTTCAGAGACCAGCAGTAGGAGGCAATTCTCAACCACGAAATATGAATATTGTTACTGTATATGACAttcaaaacaagtttattgCTTTTACAGGGACCTTCCAGGGAGTAATTGATGTCTTATGTGAATGGGGAAGCTTATTTGTcataacaatggaaaataagatttttcagtTAGAAGAAAAGGACACGCAAACCAAACTAGAAATTCTTTTCAAGAAGAACCTCTATGCAATGGCAATCAGTTTGGCAAAAAGTCAGCACTATTCTGATGGACTGATTGAAATCTTTACTCAATATGGAGACCACTTGTACAGcaaaggAGATCACGATGGAGCCATAAAACAGTACATCAAAACCATTGGCCATTTGGAACCATCCTACGTCATTCGGAAGTTCTTGGATGCACAAAGAATTCACAACCTCACCGCTTATCTCCAggcACTGCACAAACAAGGACTGGCCAATACAGATCATACTACCCTGCTTCTCAATTGCTATACGAAGCTCAAAGACGTCTCCATGCTGGATGAGTTCATCATGACTGATAAGGAATTAAACTTCGATGTGGAAACTGCAATCAAGGTTTGCCGTCAGGCTGGATATTTCAAACATGCCGTGTACTTGGCTGAAAAATATGATCAACATGATTTATACTTAAAGATTCAACTGGAGGATCTCAAAGATTATCAAAGAGCTTTGTCGTACATTGGAAAACTAGATTTTTACGAGGCCGAAGACAATATGAAAAAGTATGGTAAGAGCCTCGTGAATGCTGTGCCAGATGAAGCAACGAAGCTATTAAAAGTCCTTTGTACAGATTACAGACCCCAGCGCCTGCAGGAACGTGCAGTTTCTGGTTCAGTTACCCCTGTTACTACTGGTGTATTTCAATCCATGACAGCTGCGTTAGATCCAGTCCCGAGTGTAGAGAGGAAAATCCGCAAGGCACGCGCCGAAGAGTTCATCCATATTTTCGTACATCAGAAGGCTAAGCTGATTGAATTTCTTGAGCACATGGTGCAGGTGCAACCACACTCATCAACCAACCTTGTGTACAATACTCTTCTTGAACTGTACCTTAACGACGCAGCACGTCAGAAGGATATAGAGGCACAAGTTGAACATGAACGCAAAGCCCTTGATTTGCTGACAAATTTGGAGGCACGCTACGATATCGACCACGCCCTTGTGTTGGCACAGATGCACCACTTCAAAGCTGGAATTTTATATCTGTATGAAAAAGCCAAACTttaCCAACAAATACTTCATTACCACATGGAACAGAACGAGTACGGTCACGTGATCGACACGTGTAAGAAGTATGGCACTTTAGACACAAGTTTGTGGGTGCAGGCTCTCTCATATTTTGCCCGGCGGGAAACAGATTGCAAGTCCCAGATAATGGAGGTGTTATCTCATATCCTTTTATAACGTTCCTTTAATCACTCGTTCTTTAACTGAACTAGGCGATGCATAATAGTTGGTAATAAACGTGATCATTCCGAACCAAGTGCGGGCctttattagggagtttaagcaaagacgtttttgagcgacgcacaccaaccggaagt

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002707 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0048284 all species →	Biological Process	organelle fusion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSNQRP00000038242.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.