Detailed information of ENSNQRP00000045118.1 in Porites lobata

Genomic Location: Porites_lobata_contig_130:910199...918656
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008822 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01546
all species →
Peptidase_M20Peptidase family M20/M25/M40FamilyInterproscan
PF07687
all species →
M20_dimerPeptidase dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047177
all species →
FamilyPeptidase M20AInterproscan
IPR017141
all species →
FamilyPeptidase M20, carboxypeptidase SInterproscan
IPR002933
all species →
FamilyPeptidase M20Interproscan
IPR036264
all species →
Homologous_superfamilyBacterial exopeptidase dimerisation domainInterproscan
IPR011650
all species →
DomainPeptidase M20, dimerisation domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45962
all species →
N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006520
all species →
Biological Processamino acid metabolic processInterproscan
GO:0006807
all species →
Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0016787
all species →
Molecular Functionhydrolase activityInterproscan
GO:0016811
all species →
Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidesInterproscan
GO:0043604
all species →
Biological Processamide biosynthetic processInterproscan
GO:0043605
all species →
Biological Processamide catabolic processInterproscan
GO:0044255
all species →
Biological Processobsolete cellular lipid metabolic processInterproscan
GO:0004181
all species →
Molecular Functionmetallocarboxypeptidase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13049PM20D1; carboxypeptidase PM20D1EC:3.4.17.-
Peptidases and inhibitorsko01002deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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