Gene detail

Detailed information of ENSNQRP00000047002.1 in Porites lobata

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Sequence

CDS

Transcript

ENSNQRT00000058911

AGAAGAATCCTTTAAAATTCAAGTAACAGCTGACATTCAGTTGGACACACTGGAGCCCAAGTGGCATTATTACCAGAATCTGGTAGGAGGAGACCTAGGCCCTAGTCATTCTCAGGGGCACGTGACGTCACTACGAACTCTTTCGTGCTCGAGTACTTTGATCTTGAGCAACCGAGTCTTGCACTGGaaggtttccttttttaccttttccTGTTTTGAATCACCTTTATTCACTTTAGCATAACTACAAATCGCCGCAAAACAAAATGCCGTTAGTTTTTCTCGAACAGTTGCCGCTTCCTTCGCTTAAGTCATACGTTGCCGTGAGTGTATTGGTGTTTGTGTCCGCCATTCTCTATGCGTTGAATGTGACTATCGGTTCTGAAGAAAGCAATGTCTCAGTATACGATTTCATGTCTCAGGATAACTTTTGCTTCTGGtCGAACTTGAATATGGCCTactgttgtttatttttgtttgggAAAATCATTCAGAGAGTCGTGTTCGGCGATCTTCGAGCCAGTGAACTACAGCAAATTCAAGACAGATTCTGGAACTTTGTTTTCTACAAGTTCATCTTTATTTTTGGTGTGCTGAACATTCAGAAATTCAATGAAGTCATGTGGTGGACGGCTTGGTTTACATTGTTGGGTTTCTTTCATCTTTTTACGCAGCTTTGTAAGGACAGGTTTGAGTATTTGTCATTTTCACCAACCACGTCACCTTGGTCTCATGCAAAAGTGATTGGATTACTCAATGTTCTGGTTTTATGCTGCAATGGCCTCTTTTTCATCTGCCTTTTTATTGGCTGGCCAGATGGCATTCATACGTTTACATTCATGTTAGCAgagtGTATGCTGTTACTCATCAAAGTGATCCATGCTTTGATAAGATATGGAATCCATCTGTGGGACATTGAACACACCACAATGTGGGAAGGAAGAAGCACTTGGAGTTACAACACGGATCTGATTTTGGATTTAGCAATGTACACAGTGGATTTTGCACATCACTTACACATGCTGCTGTGGTCAAATATCTTCTTAAGCATGGCCAGTTTAGTTCTGTGTATGCAGCTTCGGCATCTTTTCtatgaaattaagaaaaagctGGCCAAGCACAGGAACTACATCAGAATTATCAAGTGCATGGAAGCAAGATTTCCTTTGGCTACTGAGGAAGAGCTGATCAAGAATAATGATGACTGTGCAATTTGCTGGGACTCAATGGCAGCTGCAAGAAAGTTACCTTGTGGTCATCTCTTTCATAATTCTTGCCTGAGATCTTGGTTGGAAAATGACACATCCTGTCCGACTTGCCGTCAGTCATTAGCTAGTGATCTGCAACCAGAACAGGAAGAGCAGAGACAACCAAGAGGAATGGCTGCCTTCATGATGGGACGCGGCCTCAGACGAAACCACTTTTTCCACTTTGATGgttCTCAAATTGCCAGCTGGTTCCCAAGCTTTTCTGTGGAAGTGATGCATACAAGAGTCAATAACTTAATGGAAGGACAACTACCTGAAAGTCGCATCGAAGCTATGGCACATCAAGTTCAAGCGATGTTTCCACACATGCCATTCAACATTATCATGGATGATCTGAGACACACCCATTCTCTGGAAGTCACAATTGAGAATGTTCTGGAAGGAAACATTGCTGTTCCATCTGTGTGGACTCCACCTGACGATCAGCGGACAGTGGAAGATTCTGAATTACTACAGATTGCACAGCCAAGTTCAACCGCTTCATCAGATAACCTTGATGACACTGGAAGCTTGTCCGCAGAGGAAGAAGATGTTAGTAGTTCAAACACAGAGAAAGCCATTGATGAAGAGCTGCCCGTGATGGAAGAGAGACAGCAGTCGTCTTCAGTCGAGGAGGCGGAGGTGAAAGAAGAAAGCAGCCCACTCACTCAGGAAATAAGAACAGCAGGGAGTGGATACACAGCTGCTGCTGCATCATCTTCAGCCGAGTTCTCTTTACAGCCTTCTGTTAGGCATACTATGCTGCTAAAGAGGAAGGAAGCAATGTTACAGCAAGCAAGGAGGCGGTTCCTTGAAAGGGAAGATTCAAACAAGTCAGAATCCTAGGAATAAATGGAATGGTGTATAAAATCATCCATTGCTGATGGTCCCAGGTCAAGAGGGGAAAAGAGGAAGTGGTTAATCTTATGTCAGTCACAGATCGTTATATCTGTTTGTAGATGCTGATATCAGTATACAGCCACTTTCATGTCTCTTCAAATGTTTGCGTGACAATAAAGGTGAAGTAAACGGGAGCCATGGTATACCTTAAACGATACAGAAAATTTGTGATATACCTAAAATAAATTGATAGTTCTAACTTAAGCTTATTTCTACCTACCCTGTTTCCGTCTGGGAAAGCAGGAAATGATGAAGTTTTATAATAATGCTTCTTTGTCACCAGATCAGGACCAAATCAAACTCACCCTTTTATAAGTCCCGGGCGTAACTATTCATAATACAAACTTACCCACGATACGATCGTAATACTGAGATTTCAGCAACGTTTTCAAAGGGCGTATCCACTCCGTCATTTTGAATGCGCAAAAAGACTTGTGAAACTAAGGTATTTTGGAAAATGTAGTCAGTATGAGTGAGATTTGCTTTACTTCGCTTTGTGCAATTTTGCTGAGCAACTCTCAGACGATGGTTTAATTTTAGTGAAAGTCACGCTGCTTGGATACTTCGGGCCACGTTAATTAGCACGTAGACTTAGTTTAGTTTAGGACCAGCTGGAAGTTGAAAAACAAGACCACGTAAAAGATTATATTTAGGTCCTGTCTGCGCAAGCAAATTTTGTGACAGTTTTTATATGCTCGTGTACGTGAAAAGAAAGGTGCTTTGCAATCTGTGAAAAATGAAGTTGTCTAAAAGTGCTGCTTCACTTTTCTGCGGTACAAAAGCTGTGACATattcatttttgaaaatgttttttagctCCTTCTCGCACCTTAGCCATGTTGTGATGCATATCGTCACTGTGTCGAATCATTCCTGGCGAACCTAGGATTAGAAACGAGTGGCTTAAACTGAATTGTCAAACAAAATTTGCTCGGTGCGGACGGG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Alpha-Helix\|CUE · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF18442 all species →	G2BR	E3 gp78 Ube2g2-binding region (G2BR)	Domain	Interproscan
PF02845 all species →	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR040675 all species →	Domain	E3 ubiquitin-protein ligase AMFR, Ube2g2-binding region	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15067 all species →	E3 UBIQUITIN-PROTEIN LIGASE RNF8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070936 all species →	Biological Process	protein K48-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10636	AMFR, GP78; E3 ubiquitin-protein ligase AMFR	EC:2.3.2.36	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.