Gene detail

Detailed information of ENSNQRP00000047062.1 in Porites lobata

Genomic Location: Porites_lobata_contig_165:154609...169452
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSNQRT00000058986

GTTTATTTCAGACTGTTTGAGACCCTTCAGATGGCTTCAGATAGGAAATAAGTATGGCCGATCACTTGCTTGTTTGTAGATGTTTTCtagttgtttttgtattttactgtTCTTTTAGACTCTCCTATGGTGTATTATATTCATCCGCCGACCATATAGTGCTTTTAGAAAACGATACAATCTCCAGTGTAATTCATAATAGTCAGTCGGCTTGGATCGTCGAGTTTTACTCTAGTTTTTGCGGACATTGTCATGCTTTTGCTCCGACATGGAAAACGCTAGCAAGGATGGCGAAAGACTGGAGAAAGCTCATACACGTTGGCGCTATTGACTGTGCTGAAGAGCGTAATCTCCAGACATGTATAAATTATGAAATAGAAGGTTATCCTACAGTAAAGtttttcaatgCATCTTCTTCAAGTTCTAATTTAGGTGAAAAATTTCCAGGAGAGAAGACTTTATTAAACCTTCTTCATAAAATGGTCAAGGTTGCTGAACTACAGAAAAACCTTGGCTTGGTGCGTGCAGATGTGGATTTTATACCAGTAGGGAAAGAGTTTGTCTCTAGTTTTATAGAAGGCAGAAGTCGCAGAACATCAGAAAATTATGATGAGTTAGCACTAATTTTCGAGGTACCAACGTCATACATTGGCCGTGAGGTCATCTTAGATTTTATGCAATGCCCTCGCTTGGGAGTCAGAAGagtattaaataaaaatAAAGATCTTGTGGAAAAATATGCAGTAAAGAAGTTTCCATCCCTTGTTCTGGTGCACAGAAAAGGCACATTTCGGCATCTTTCACATGATGAAAAAACTCACGCAGGTTTTAAGACTGCTCTGGATGAGGTTTGTCAGGTAGTTAGGCCCTTCCCTGAACTGTCAGCTGTCAAGGATGCTATGGATGTGTACAAAAAACGTCACGGCAAAGAGGATCAGAGAAAACAACAGGCTGGAAGCAGCTCTGAGGTGTACATGCAAGACTTGGAAAGTGGCCTGTCGTACATGTTTAACGTTGAAGTTGGAAGCAAATTAATTTTCCATAAAGTCGAGCTAACAGCTCTCCAGAGCTTTGTGGCCATGCTTGGAAAGtgttttcCTGGTAGACCGAGTCTTCGCGAAGTATTCAGCAAGTTGAGTGTGAAACTAATACCTCAGCCACGGAAGACAATGCTGAGATCGGAGTACTTGTACCATCTGAAGGACGCTCAGatGCATTTCAAGTCAAGTCAGTCAAATGACGGTTTTCATTCTCCTCTACCCAGTAAGGCAAAGTGGGCGGCCTGTGCGGGAAGCCAGCCTAAATATCGTGGTTACCCGTGCAGTCTGTGGACTCTGTTTCATACCTTGACTGTCAACTGCGGAAGTAGCAGTGGTTTGACGGGACTAGATGTCCTTTTACGAATCCAAGATTACATCAAATACTTCTTTAGCTGCGACTACTGCAGAAAGCATTTCATGGCTATGTCTAAGAATCTCAAAACAGAGGTGGATTCACACAACAGCGCGATTATGTGGATGTGGAGCAGACACAATAAGGTGAACAAACGTCTGgctggtgacaacagtgaagaTCCAAAACATCCTAAGATCCAGTTTCCGTCGAAAGATCTCTGCGAAGAATGTCGCCTCCCTGGTACCAGCACTGGCGACGAGATTCACTGGAATGAAGGCGTGGTTCTGGAGTTCTTGAAGAACCACTACGGTGTGAACAACATTAGGATCAAGAAACCTCCCGCGCGCTCCTCTCCTGAACTGGAAGACACTGACATTGTAAGCAAGCGTCACTTTATCTCTCATCTTAGCGCTATCGGCCTGAGTTCGATTGACGCCAGCATGTGTCTAATTCTTTATTCCGCGATAGCTCTCGCTGTCATCGCCTTGTATATTTATTTCATCCGAAGGCGGCGGAGAGCAATTAAGGTTCGCGTGCACGCTCCATAGGTAATCTGATTCTGGAATAGTTTCAGATTAGCTTCGCACGCATAAAGCCCCCTCCTAGATCTAAAGTCAACCTGCGATATGGACTGTGACATTTGAAGATTTTGCATGATGTGGCTGAAAAATTGCGGGGTAAATTACTGGAAATTTGGCTTTATATAGTCGGGCGTACGAGATGTCACCTTCTTAGTCTTGTGGTTGACTTAAAAATCCCAGTTGAACCTTTAAGCATTTGCGCTAGGAAACGCGGTTTAAACGAAGTTGCTTTTAAATTGTTTAAATTTGTTCTACATTAgagaatattatttattatttgtgcCTTAAATCAGGCAGAACAGTTCATTATTATAATGTTCAGATTAGCTGTTCATACAACAGTTGTCATACTTAAGACTTACACCGCTCCTGATTGTTAAAGGATGCTTATAAATCAGATCccgatttatttttacaaccACAGAAGTAGTCTCTAAGTAACTTTGTGGCAAGTTTTAACAGAGCAGTTTATAATGTTATGATAACGTGAAGACAAATTTCTTAATCGAATACTTAAACTTGTAAATAATGATAAGTTTTAAGAtgaattttagtttgaaatctATTTTCGTAGATATTTATATAGCAGCGTCTATTGATCATCGCCTTATGAAGGTAATTTAATCGACCCTCGCATTGAAAATTCACGTTCAAGATCGCGGGTAGAATGGATAATCGACAATTTCTCCAAGGGATTGGAATCCGGAACCATTTCGAAACACTAGCGATTGGGAAGGTTCCCCTAACACACCGAGAGACGATCAAGAATAACTTAGCTTATCACCCTTGTAGGTCTCACTGCACCTGAGGCAATCTTTCTAAGTTATTGATATCGACatggcgaaaatttaaaaaaaaaaaaagttttgatgTAATGACCGTGCGTTGTTTTAAAGAGAGTTGAATTCCTCGTTTTCTAAAATTGTGTTTTAAGTCTTACGATGTTGTCATTTTCGAcggaaagat

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004577 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18108 all species →	QSOX_Trx1	QSOX Trx-like domain	Domain	Interproscan
PF04777 all species →	Evr1_Alr	Erv1 / Alr family	Family	Interproscan
PF18371 all species →	FAD_SOX	Flavin adenine dinucleotide (FAD)-dependent sulfhydryl oxidase	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036774 all species →	Homologous_superfamily	ERV/ALR sulfhydryl oxidase domain superfamily	Interproscan
IPR042568 all species →	Homologous_superfamily	Sulfhydryl oxidase, flavin adenine dinucleotide (FAD) binding domain superfamily	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR017905 all species →	Domain	ERV/ALR sulfhydryl oxidase domain	Interproscan
IPR041269 all species →	Domain	Sulfhydryl oxidase, Trx-like domain	Interproscan
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR039798 all species →	Family	Sulfhydryl oxidase	Interproscan
IPR040986 all species →	Domain	Sulfhydryl oxidase, flavin adenine dinucleotide (FAD) binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22897 all species →	QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016972 all species →	Molecular Function	thiol oxidase activity	Interproscan
GO:0003756 all species →	Molecular Function	protein disulfide isomerase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016971 all species →	Molecular Function	flavin-dependent sulfhydryl oxidase activity	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10758	QSOX; thiol oxidase	EC:1.8.3.2	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →