Gene detail

Detailed information of ENSNQRP00000051042.1 in Porites lobata

Genomic Location: Porites_lobata_contig_194:616686...618891
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSNQRT00000064145

tgCTTACATGACATAGCGGACGTTGCGTTCACGCGGACATTCGCGCGGATTTTGGATTCTTTGAGGCCGATTTTCCCGCAGCTAAATGACACCGTTATCTTAAACTGCGTCAGGAATGTACGAGAAACGGTAGGAAGTGATCCGCTCTCAATCATTCCAGGCTGTATCGATGTCCTCTTAGCTGAACAGTCTTTTCCCGAAGTTCCTGTTCCTCAGAACAGACCAGCTGCTGTGACCATTTCGCCCCACAATAACGATCCTGCAggaaattttcggattcaaaacaACGATGACGATGTTATTTTCGTTGCGAGCACTTCCCGCTCTTTGATCGATGAGAATGAAGTGACAATTATCTCGAACACCAAGTCGCCTGCTTCGAGTAATAACACGTTAGCATCTCCTCAGTCTCTAAATACAAGTAGACCAACAGAAACGAGAACAATTTCTGTAACTGAGAGTACATTTTCATCTACCACGGCGACAACGGGCTCGAAAGGAGAACGCGATGTTCAGTCTAAAGTTTGTCATGTTGAAAAGGCTCTCGATCCAGCGGAGGAGGCGTTGAAAAACCTGCGGTCTTTATTTCCCGATGTAGAAGACGCCTATGTTCAGACGTTGTTAAAGCAGTGGTCACATATCCCACTATATGAGGCTGTAAACAATGCTTGTAATGAATTGTTAGAGAAGAAAGATTATCCGAGAAAATCTCCATCCCCTATTTCAGTTACAAACCCAGTGGATGACCAGAAAGATAAAGACTACTTTCAGGATTTCTCTACCAGGGTATCAGACAAATTTCGACATCAATGTTTTATCCTTTTGCAAAATGATTTCAGAATGATTCCAGTTAAATACATTAGGTTGGCTATGTCAAAGTTCAAAGGTCATTATGCTCCCTCCAAAAGGTATTTGCAAGAACAGCTAAGGATCTCTAACACTTCTAATGAAACCAGCACATCAGCTACAACTTCTGCAGTACAGGGAACAACTTCATCCTCATTGAAAACAGAGCAGACCAGCTCAACATCCAGCCGTAACTTTTTTGTTCCTCCTAAAATAGTTTTGTTAAGATGTGGACGTCCTCTAGTCTCAGGTTTTTCAAGAAGTGTAAGTGATAAAGAATTGCAAAGAGAGATTGATTTTATGAGAAAGTATGAGCTATCCAGAAGTGAGGAGATGGATCGAATGCTTGCTGCCAGCTTAAATGATGAACAGTATGAGGAGGAAGGGCAGAAAATTGAATGTGGCTGTTGCTATAGTGATGCAGCTTTTGAGGACATGGTTCAGTGCTTGGAAGGTCACTTATTTTGTGCGAGCTGTCTTATGAACTATGCTAAAGAAGCAGCGTTTGGTCAAGGTAAAGCAACACTCACATGCCTGACTGACGGCTGTGATGGTACTTTTCCATTGAGCCAGCTGAAAAAAGCGTTACCAACCAACATCCTGGAGAAATACGAAGATCGAGTGAAAGAGGAGTCTCTGTTATTAGCCCAGATGGATGATTTTGTACGGTGTCCTTCATGCGATTTTGCGGCAATTCTGCCGCCTGAAGTCAAAGTGTTCAAATGCCAGAATCCTTCTTGTGCCAAAGAAACTTGCCGCTATTGTAAGGAGGATTGGTCTGAGCACTTTGGTTTAAGATGCAGTGAGGTTGAGAAATCGGCACAAAAAGATGTCCGGCTCTCTTatgaagaaaaaatgacaatgGCAAAGATACGGAAATGCCCCAAGTGTGGCTGTGAGTTTACCAAGTCAGATGGTTGCAACAAAATGACCTGCCGCTGTGGAATGAAAATGTGTTATGTCTGTCGCAAGCCAAACATTGGATACAATCACTTTTGTCAGCACCCAAGGGATCCTGGCAAACCTTGTGCTAAATGCAAAAGCTGCTCCCTTTGGAGTGATCCTAGCGAAGATGATGACCGTGCAGTAAAGGAGATAGAGAAGGAGGCTCTTGAGGCAAAGAGAAAGTTTGAAGCAGAAAATGTACCGTCAGAGGATAACCCTGCTAAAAAATCAAAGACAAACTGA

Transcript

ENSNQRT00000064145

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007041 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was recorded for ENSNQRP00000051042.1 in Porites lobata.

InterPro

InterPro term	Type	Description	Source
IPR051628 all species →	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR047544 all species →	Domain	E3 ubiquitin-protein ligase RNF216, RING finger, HC subclass	Interproscan
IPR047545 all species →	Domain	E3 ubiquitin-protein ligase RNF216, BRcat domain	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR047546 all species →	Domain	E3 ubiquitin-protein ligase RNF216, Rcat domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770 all species →	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0071797 all species →	Cellular Component	LUBAC complex	Interproscan
GO:0097039 all species →	Biological Process	protein linear polyubiquitination	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11976	RNF216, TRIAD3; E3 ubiquitin-protein ligase RNF216	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →