Gene detail

Detailed information of ENSNQRP00000055944.1 in Porites lobata

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Sequence

CDS

Transcript

ENSNQRT00000070651

GGAGATTTCCCGAATTCCCGACACTGACAGGCAAAAAAATCCTGCATCCCGTGCCCAAATTGGATTGAATCTCTCTCCTATTCCGTTAAGATATTTTTcgttttcccgaatcccgcaaAGTATTTTGGCCCGAAAAAATCCTTCCGGGAGTCGGGACAAAAGGGCCCGGTAAGAAGAGACAAGGCACCATTGTCaagaacgcctggtagttttcaTTGTTATGCAATGGTCTTGGAATGATTTTGTAGTACATTTGCAGAAACTTCTGATTTTATTTACTACTGCCTGAGAATTTAAAAATGCCAGAGGGACCAGAACTTTACAAAAACGCTCAGATGGTGAATCGAGTTTGTAAGGGACTTGTATTTAGCGGGAAGATCATGAAATCGGCTGTCAGCACAAAGAACCCAGACGTTTCATTTGCCGCTCGTGAATACTCCATCCATGCAGAATCCAGAGGGAAAGAAATGGCGCTTGTTTTAACTTCTCTCGCCTCAGAATGCAAGTCAAAGGTGATCAAGCAGGAGAATGGCCGGGGAAAGGAAAGGATGAGAATTCTTTTCAGGTTTGGAATGTCGGGCAAGTTCACGTTTGGTCCTGTGAAAGATGTTCATAAACACGCACACTTGAACTTTTACACGAAAGACAAGCCGTTAATGGTATTGAGTTTTGTGGATGTTAGAAGgtttggcCGATGGGAGCTGACAGATGAGTGGTCTAAAAATCGAGGCCCTGATCCAATGTTTGAGTACAAGGAATTTAGATCAAATATTCTTGACAGCCTAGaagataaaatttttgacaAGCCTCTGTGTGAAGTCATGCACAATCAAAAATACTTCAATGGAATTGGAAACTATCTCAGAGCTGAAATAATATTTAGATCTGGCATTCCTCCTTTTTCTTGTGCGAGGTCTGCACTTGAAAAGCTGAGAATAAAGAAGGAGAATGATGTTTCTGAGATCCACAATCACAAGAAAGTCAAACTTGAAAACTGTCTGGACATCTTAGATCTATGTAATCTGGTACCCAAAGAAGTTATTAATCTGCCTGGCAAAGGTTATGACCCGTCAGGAAATCATTCAGATTACTCTGGCTTCACCAAATGGCTTCAGTGCTACTACAATTCTGAGATGAGAAACCTGGTTGATCATGATGGGAGGACCATGTGGTTCAAGGGTGAAGCTGGACCAATGGTACCCAAAGAGGCAAAATCAAGAGGGATGCAGAAATCTAGGAAGAGGaagacaaaagaagaaaataaagaacaagACAATGATACAAACATCAAAGTGGAGCTGTCTTCCCCTAAGAAGCCGAAAACAAAAGCACCAccagtaaaaacaaagaaaaaagCAGAGAATAGCAAGAAAAAGGTTGTTAAAAAACAGTGCAAAACTAAAACATCAGTGTCAAAGAAAGAACCCGTCAGAAGAAGTCTTCGCATTAAAAGAGCCCGAGAGAGGGACGGCTTGTAACATCACGTAATTAAGAAACTGTCGTGGGATGGTGTGAAATCATTTACATTTAAGTGTATTTttccaatttaattttaatacaGTATATAACGTTTTTCTTATTGCAACCAACGAATTCTCCTTACCAGCCAAAAGGTTGGAATAATTAGGCGATTATAACGtacattaacccattcgctcctggagattttgccgaaaaacgcattttgaagctagtcgagtggttttctggtcactgtcgtgctataaagagctaaaacttaccacaaaccggtttacaggttgtacacttggcggccttctgatccagatgcaaaacatcggcttgcgaagttcgggcatgcgcagaaagcaaaatttcgagtttttgggtttaaaagtgacacagcagtcttgacttttacttttcgctttttctcctcccttcttttttcgcttttcttgcctcattttttttttcctcttgctgggcatttagtaggcttcattttggtgggaagagtttttaggaaagctttaaggaacttaggattaggtgaaaggaaaggtaggtgggcaatggaacaagattttcatggagattttcaggtcaatttcacgtggttttttgcttctttctccggtgtccttgactgatttgtgctcattctggtattgtttgaaagatctcttcactctacacaagttagcgaagaaagttgtccttgaccgttaaaactgatgacgtcacaaagggtagaaaggacctggatccgcacgggcggttacgggcggttcaggggcgaatgggttaagtaCAGTTTTATTATAGTTAAACAAAGTCGATGTAATTTGACTTACATTAGAGAAGAAAATATATTACATTTTCAATGATAACCTGTTTACAGTTCTTCAGCTATCATATGCTGCTTTGTTATATATACTAAATTCCCTGGGGGTTACTTCCTTATAATTGGCTAATGgcgatgtgccgctggatggggtcgcattttcacgact

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01149 all species →	Fapy_DNA_glyco	Formamidopyrimidine-DNA glycosylase N-terminal domain	Domain	Interproscan
PF09292 all species →	Neil1-DNA_bind	Endonuclease VIII-like 1, DNA bind	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012319 all species →	Domain	Formamidopyrimidine-DNA glycosylase, catalytic domain	Interproscan
IPR035937 all species →	Homologous_superfamily	MutM-like, N-terminal	Interproscan
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR015371 all species →	Domain	Endonuclease VIII-like 1, DNA binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22993 all species →	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0019104 all species →	Molecular Function	DNA N-glycosylase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10567	NEIL1; endonuclease VIII-like 1	EC:3.2.2.- EC:4.2.99.18	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.