Gene detail

Detailed information of ENSNQRP00000057798.1 in Porites lobata

Genomic Location: Porites_lobata_contig_354:27585...40574
NR annotation: no NCBI-NR hit recorded
Species Porites lobata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSNQRT00000073384

ATGTCTTCTGTGGCGGCGATGGAACAAGCGACTTTAGGTCAATATTTTAGCACAAGAAAGAAAGGTCTGGAAGATTTCCATCCTGCAAAGCGAAGGAAAGTTGAAGCGACAGGCATTGAAAGCGAGGTTTCTATCAGAAGGAGTACGCGAGCGAAGCGGCAAGTGGCGTCCTCTCAAACAAAGAGCAACGCTCGAGCTCGCAGAGGAGCTAAAAGCAGAGCGAAAGAATCTTTGAATGAAAGAAATTGCAAATCTTCTGAAACACTAGATAACAACGTTGTTAGCGAAACAACGTCATTGTGTGATGATCATGCTTTCGCCGAAGCTTTGATCGGAAAGTTATCGGATGCGCAGCGAAAGCGCAAGATGGCGTCCAAAGGAATAGTTGAAACTGACGATTCCACCGCGAGCGTCTCCAGGGACAGAAAACAGGCGCAAGAAAATAGTGAAGACGTCGAGCCCAAGCAAAGGAATCGGAAGCGAACGCAGAGATCTTCAAAGAAACCACCAAAAGACACAAAAAGTATGGAGGAAAAGTTAGTTTCTTCCCAGTCAAAGACGGATTGCTCAGACGAGCAGACGTTGCGCGAGTCCGATATCCCAGCCAACAGGGAAGCAGAAATTCAGTCGTCACCTTGCAAGACTCCACCTATTGTGAGAAGGATCGATGGAGGCGTAAAAAGTAATCCATGGATCGCAGAGCAGGCAAGAATGGTTCTAAGCCGAGGTAGAGCAGCAGTGAGTATGAGTCAACAAGGAAAGAGAAAGATCAAGGATTGTGTTCAGATCACTTCCACCAATGAAAGCAATTCAGTGAGAAGCTCTAAAACTGGAGGAAATGCCACCAAAGCTGAAGAAGATCTCGCGAAGGCAAGGAAACTGATCAAAAGCATGAGATCACTAGAAAAAAGTGCATCCAAAAGTTCACAATCTACTACTGAGGATAATAAACAGAGGCTTCACCAAGTCGCACAGGAGGTTCCAGCCTATGAAAGATTCCATGCCCTGGCTCAGCCCAGTCCAACAGCGGTATCACCTGCAACTTTACCCCTCCCCTACAAGTACAAGAGTTTGGCAGAAATGTTCCGCTGCACTGATACAGTGCTGAACCTGCTGGGACAACGGAAAGAGAAGTGTACGTTCTCAAAGCTCAGAGATGCTGTACAGCAGATGTCCAGAAAGAGGTTTGAGAAGAAACATTTGGCACAGATGAAAACTGTATATCCATCAGCCCTAGAATTCCGTCAAGACAAGTGTCCTGGGAAATCTTCTTCATTTGAGTTGACCATTGAGTTTGGAAAAACAGAGGAGGCAGATAAGAAACTAACGTTGACTGCAACTGAATTGCTAGCAAGGAAAGATGCTTTTGAGAAACGTCTACTGAAATTAACCAAAAAGCACCACCAGGATTTTCTCCAGAATGTTAACCCAGCTGTAGTGGTTGATGATGAGAAGATCATGCGATGGCACCCCAAATTTCGACTAGATGAAGTTCCGGATGTTGATGAAACTGCTCTTCCTCAGCCGCCAGTGGTCAAGACATACAGTAGTGCTCATGACGTGTTGGAGAAAGCACGAGTCATGATGGCGCCAAGGgtTGAGAAAGCATTACGAACAGTTGCCAAGGAACAAGACGAGAAAGAGCAGAAAAATACCAACAAGCACAGTAACCTGCCTGAGGACAAAGATGCAAAAACCAAGGAGAATACacagaacaaaaacaacttcaaaaataatgcagCCTTGAAAGGGATCTCACAAGATTTGCTCAATAAGATTCGCCAGAAGGaagcaaagaaaattgaagaatGTATGATGCGAGATCCATTAGTTGACAAGAAACTTGCCATGAAAGAACGTCTTCCTGATTTGTGTAGAATACTTAAGGCTTATTTTGTGACTGAGCGCAAAGCAGCTATCCCATTGGAAGATGCAACAGCAAAACTATCAGAAAGCTACAAGACCTCCTTGTCTCAAGTTCAAGTGGAGGAACACATCAGATTTATGTCACAGCTTGTTCCAGAGTGGATATCAGTTCTTACAGTACGGAAATGTGCCTATGTGAAAATCAACAAGACTGCAGATGTAAACAACGTGATTAACAAGCTCATCACTAAAGATGTCCATTAA

Transcript

ENSNQRT00000073384

attttcgcgccaaaattagaGCAAAGAACCGGCAATCATGTCTTCTGTGGCGGCGATGGAACAAGCGACTTTAGGTCAATATTTTAGCACAAGAAAGAAAGGTCTGGAAGATTTCCATCCTGCAAAGCGAAGGAAAGTTGAAGCGACAGGCATTGAAAGCGAGGTTTCTATCAGAAGGAGTACGCGAGCGAAGCGGCAAGTGGCGTCCTCTCAAACAAAGAGCAACGCTCGAGCTCGCAGAGGAGCTAAAAGCAGAGCGAAAGAATCTTTGAATGAAAGAAATTGCAAATCTTCTGAAACACTAGATAACAACGTTGTTAGCGAAACAACGTCATTGTGTGATGATCATGCTTTCGCCGAAGCTTTGATCGGAAAGTTATCGGATGCGCAGCGAAAGCGCAAGATGGCGTCCAAAGGAATAGTTGAAACTGACGATTCCACCGCGAGCGTCTCCAGGGACAGAAAACAGGCGCAAGAAAATAGTGAAGACGTCGAGCCCAAGCAAAGGAATCGGAAGCGAACGCAGAGATCTTCAAAGAAACCACCAAAAGACACAAAAAGTATGGAGGAAAAGTTAGTTTCTTCCCAGTCAAAGACGGATTGCTCAGACGAGCAGACGTTGCGCGAGTCCGATATCCCAGCCAACAGGGAAGCAGAAATTCAGTCGTCACCTTGCAAGACTCCACCTATTGTGAGAAGGATCGATGGAGGCGTAAAAAGTAATCCATGGATCGCAGAGCAGGCAAGAATGGTTCTAAGCCGAGGTAGAGCAGCAGTGAGTATGAGTCAACAAGGAAAGAGAAAGATCAAGGATTGTGTTCAGATCACTTCCACCAATGAAAGCAATTCAGTGAGAAGCTCTAAAACTGGAGGAAATGCCACCAAAGCTGAAGAAGATCTCGCGAAGGCAAGGAAACTGATCAAAAGCATGAGATCACTAGAAAAAAGTGCATCCAAAAGTTCACAATCTACTACTGAGGATAATAAACAGAGGCTTCACCAAGTCGCACAGGAGGTTCCAGCCTATGAAAGATTCCATGCCCTGGCTCAGCCCAGTCCAACAGCGGTATCACCTGCAACTTTACCCCTCCCCTACAAGTACAAGAGTTTGGCAGAAATGTTCCGCTGCACTGATACAGTGCTGAACCTGCTGGGACAACGGAAAGAGAAGTGTACGTTCTCAAAGCTCAGAGATGCTGTACAGCAGATGTCCAGAAAGAGGTTTGAGAAGAAACATTTGGCACAGATGAAAACTGTATATCCATCAGCCCTAGAATTCCGTCAAGACAAGTGTCCTGGGAAATCTTCTTCATTTGAGTTGACCATTGAGTTTGGAAAAACAGAGGAGGCAGATAAGAAACTAACGTTGACTGCAACTGAATTGCTAGCAAGGAAAGATGCTTTTGAGAAACGTCTACTGAAATTAACCAAAAAGCACCACCAGGATTTTCTCCAGAATGTTAACCCAGCTGTAGTGGTTGATGATGAGAAGATCATGCGATGGCACCCCAAATTTCGACTAGATGAAGTTCCGGATGTTGATGAAACTGCTCTTCCTCAGCCGCCAGTGGTCAAGACATACAGTAGTGCTCATGACGTGTTGGAGAAAGCACGAGTCATGATGGCGCCAAGGgtTGAGAAAGCATTACGAACAGTTGCCAAGGAACAAGACGAGAAAGAGCAGAAAAATACCAACAAGCACAGTAACCTGCCTGAGGACAAAGATGCAAAAACCAAGGAGAATACacagaacaaaaacaacttcaaaaataatgcagCCTTGAAAGGGATCTCACAAGATTTGCTCAATAAGATTCGCCAGAAGGaagcaaagaaaattgaagaatGTATGATGCGAGATCCATTAGTTGACAAGAAACTTGCCATGAAAGAACGTCTTCCTGATTTGTGTAGAATACTTAAGGCTTATTTTGTGACTGAGCGCAAAGCAGCTATCCCATTGGAAGATGCAACAGCAAAACTATCAGAAAGCTACAAGACCTCCTTGTCTCAAGTTCAAGTGGAGGAACACATCAGATTTATGTCACAGCTTGTTCCAGAGTGGATATCAGTTCTTACAGTACGGAAATGTGCCTATGTGAAAATCAACAAGACTGCAGATGTAAACAACGTGATTAACAAGCTCATCACTAAAGATGTCCATTAAACGCCCGGGttagtttttgaagttttaacaGTGAAAGAACTTGATCTTGTTAAAATCTAGTGGAACAGCCTTTGAGTTCATTATCTTCCAATATGGAAAGAGAAACTTGAGCTCTCAAAGTTTGCTCTTTGCAGAAACTGAGACTTTAGGATTCCTTAGCAGCTGCGCATGCAGATTAGACAGTTGTCGAACAAACAtggaaaaagtttgaaattgtTCCTAAGAACTTGATGCTTTAATCACACTAAAATGTGTATGAGTCATCTAgactcaaacaaaaaaattcaaccaatCTTCTACTTTTACAATGCAGTACTTTATTAACAACTTGAGGATGTAAATACTGACAGAAAGGCAGGATGACATTGTTCCGTGACTCAACTTGTTTGACAGACAAGATGGAACTAATCTCTTtttaacagttattttttttgttttgtgtgaaaaatgaaacagtttttagattattttactaaaaaaattattagtgtcaatacatatattttttttaagttagaGCTAACTATGTTGTTAATATTCTAATCTTGTGACTTGTTAGTGAATTTTTACCAGGCAAGGATTTAAACCTTGGCCATGTTTTCATCATTAAAAGCAGCACTTTGTGGCTAAAAGACAACTTTATGGCCTTAGAATTTTATCATCATGCATTTGCTTTTACTGAAGGTAatagaaaagtaaaattattttactgttaatttTATCGATAAGGGCATCAAGAATGACAATGTGACTGTGCCTATGTTAACTTGTTGGTTTATATGAGAGGGATTTTAAATGAAACAGTCAAgtaatagaaaacgttttccatgtttgcatagcctgatataaacacgagaggggttcgGAGAATTCgtgggtttgcataactgttgagaattctcccaactcCTTGAGTGTTTCTATCAGGCTATGGAAATACAGGAAAacagttttctattgcttttatacaTTAACTTTCCCGAGACAAAACtcaaaact

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007862 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08839 all species →	CDT1	DNA replication factor CDT1 like	Domain	Interproscan
PF16679 all species →	CDT1_C	DNA replication factor Cdt1 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014939 all species →	Domain	CDT1 Geminin-binding domain-like	Interproscan
IPR045173 all species →	Family	DNA replication factor Cdt1	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR032054 all species →	Domain	DNA replication factor Cdt1, C-terminal	Interproscan
IPR038090 all species →	Homologous_superfamily	DNA replication factor Cdt1, C-terminal WH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28637 all species →	DNA REPLICATION FACTOR CDT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000076 all species →	Biological Process	DNA replication checkpoint signaling	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030174 all species →	Biological Process	regulation of DNA-templated DNA replication initiation	Interproscan
GO:0070182 all species →	Molecular Function	DNA polymerase binding	Interproscan
GO:0071163 all species →	Biological Process	DNA replication preinitiation complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10727	CDT1; chromatin licensing and DNA replication factor 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lobata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lobata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →