Gene detail

Detailed information of ENSODKP00000001161.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_002161645.2, peroxisomal membrane protein PEX13 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Sequence

CDS

Transcript

ENSODKT00000001161

AGATTTGAATcaagaaaaataagtgaaattcatttgaatgaaaagctggttCATCTGACAACACCGAAGGCAATGCACGGCCAATCCTTGGACCATTGTGGAGGAAAGGGAGAGGTACAGTTTAAATGAACCCACCAAGGAAGCCATGGGAAAGTCTAAGCACCAATTGTCAGAATAGCTCAGGAGTTACAAACATTGGGAGTGATGGGCCAGGAATAGGTGCGAGCTCGTTTGCGCAGACAGACTCGAATGGAAATCCGCCGCCGGTGCCAGCTAGACCAAACCAGATAAATTCAAATGTTCGGACACCTTTCTCAGCTGGTTATGGCGGTATGTTTAGTAACCCGTACTCCAGTTACTTGTATGGATCCCCAGGCTATGGATTGTCTTCTTATGGAGGGGGTATGTATCACAATGCCCCATACAACAATTCATTCTTGAATGGAGTGGAAAGCTACACGCAGCCAACATTCCAGTCATTTCAGTCTGTTATACAAGCGTTTGGTTCAGTAAGCATGATGCTGGAGTCAACACTGTTTGCTGTTCAGAATTCAGTGCGGGCCATtgtcaGTGTAGCGGATCAGTTCAGTCGATTGAGGCTTCAGTTGATTTCAAGTTGGATAGCGATTCTACGAAGCATCAGATACTACTTTCGGAAACTTCTGATAATGTTTCGTGTGAGAAAGCCAATGTCAAATGACACCGTATGGGAGGAATTAACAAATGGTGTTACGCACGATCCTAATCCGGAATCGCGACATTGGcccattgttttatttttcgcCATTGTTCTTGGTACACCTTGGATAATGCGAAAGTTGTTACTGCTAGCAAATATCGATAGAAAATCTCATAAGGATTGGCAAAAAGGGATTGGAGAACATTTTCTAGCAGAAGCGAAATTTTCCTACACCGCTGTCAGTGACGATGAATTGAGCATCTCTCAGCGTGAGATGATTCGGCTTGCACCCAAGGAAATGCAGCCTCACGTGAGGGGTTGGTTGCTTGCATCAAACGGAGAGAAGACTGGGTTGGTTCCAGCGAATTATGTGAAGGTTTTGGGAAAGAACCGACAAAATGCAACTGTCAAAAAAGTGACTCAACCAAAAATTGAAGAGGTAGAGCCCGTAACTACAGAAACTTTGAAAAGCGAAAGTTCGTGATCACTACCATGAACTGATTACTGATCTGATCACTACCTCAGATAAAGGATATTTCATGGGAATGGAACGAAATTGTGTTTGGAAAGTCAGTTTAACGTTTccacagaagaaaaaaaagtccCCCCCTCGGCcccaatgataataatgaaatttgatatatatatatatatatgtgaatatatttttataaaatatgttataaattatttggaaaagaaGCATTTTAAAAGGCAAATTATTATGATAGTTAAATTACTTTGCAATAAAGTCTGGAATCTTTTGGCGTGACGCGTGCCTTTTTTATGGCTGAAGACTAGAGTCCTTTTCGGAGCTGAAATGTTTTGGGACAGCTGGGTTTTTGCGTGTAATTGCTCTGAATATAATTCCCTTGAATTCATAGTACACTCCCAGCAAATGGTTTATCCTtgcgaggtcgatcaaatgagttcCAGGATTTCCTGAGGACTTGGTGGTTAAATTGGatgaagtattcaagaatgaaccaagtaaaatttgtggaagacagcctttaaaaaattttgaagggatatggtctgcttaaaggttgtgtccgctacatttttgccaatttgttttgtatatctaaaagagagcacttatgaaacaaggaaaaatgttttttattcacttcgaaagatcttttcgttcttgagataatttcGTTCGTGagatcttttcgttcttgaaattttaactttttagatattcaaatatcgagacgtaatcaaatgcccaatcatgaaacacgaaacacatgttattgaataatttgggaagtaaacacattctgttattgaaatttggccagtttatgtaatattagagaataaaatttttatcaaaaaagtacttgaaaaataTGGCttgggaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D4A2Y9	Peroxisomal membrane protein PEX13 OS=Rattus norvegicus OX=10116 GN=Pex13 PE=1 SV=3
Q9D0K1	Peroxisomal membrane protein PEX13 OS=Mus musculus OX=10090 GN=Pex13 PE=1 SV=1
Q0P5B1	Peroxisomal membrane protein PEX13 OS=Bos taurus OX=9913 GN=PEX13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006893 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04088 all species →	Peroxin-13_N	Peroxin 13, N-terminal region	Family	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR007223 all species →	Domain	Peroxin 13, N-terminal	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR035463 all species →	Family	Peroxin 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19332 all species →	PEROXISOMAL MEMBRANE PROTEIN PEX13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016560 all species →	Biological Process	protein import into peroxisome matrix, docking	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:1990429 all species →	Cellular Component	peroxisomal importomer complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13344	PEX13; peroxin-13	-	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.