Genomic Location: chr1:277033728...277080360
NR annotation: XP_012556035.2, mitotic spindle assembly checkpoint protein MAD2B [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families
| CDS |
| ENSODKT00000003101 |
| Transcript |
| ENSODKT00000003101 |
| Protein |
| ENSODKP00000003101.1 |
| UniProt accession | Description |
|---|---|
| Q568H3 | Mitotic spindle assembly checkpoint protein MAD2B OS=Danio rerio OX=7955 GN=mad2l2 PE=2 SV=1 |
| Q4KWZ6 | Mitotic spindle assembly checkpoint protein MAD2B OS=Gallus gallus OX=9031 GN=MAD2L2 PE=1 SV=1 |
| Q9UI95 | Mitotic spindle assembly checkpoint protein MAD2B OS=Homo sapiens OX=9606 GN=MAD2L2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005083 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02301 all species → | HORMA | HORMA domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036570 all species → | Homologous_superfamily | HORMA domain superfamily | Interproscan |
| IPR045091 all species → | Family | Mad2-like | Interproscan |
| IPR003511 all species → | Domain | HORMA domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11842 all species → | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016035 all species → | Cellular Component | zeta DNA polymerase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13728 | MAD2L2; mitotic spindle assembly checkpoint protein MAD2B | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Millepora complanata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Millepora complanata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
