Genomic Location: not available for this species
NR annotation: XP_038055350.1, LOW QUALITY PROTEIN: exosome complex component RRP43-like [Patiria miniata]
Species abbreviation MCOMP · all data for this species · gene families
| CDS |
| ENSODKT00000005298 |
| Transcript |
| ENSODKT00000005298 |
| Protein |
| ENSODKP00000005298.1 |
| UniProt accession | Description |
|---|---|
| Q9D753 | Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1 |
| Q2KHU3 | Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1 |
| Q96B26 | Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005440 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01138 all species → | RNase_PH | 3' exoribonuclease family, domain 1 | Domain | Interproscan |
| PF03725 all species → | RNase_PH_C | 3' exoribonuclease family, domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027408 all species → | Homologous_superfamily | PNPase/RNase PH domain superfamily | Interproscan |
| IPR001247 all species → | Domain | Exoribonuclease, phosphorolytic domain 1 | Interproscan |
| IPR015847 all species → | Domain | Exoribonuclease, phosphorolytic domain 2 | Interproscan |
| IPR036345 all species → | Homologous_superfamily | Exoribonuclease, PH domain 2 superfamily | Interproscan |
| IPR050590 all species → | Family | Exosome complex component Rrp42 subfamily | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11097 all species → | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000176 all species → | Cellular Component | nuclear exosome (RNase complex) | Interproscan |
| GO:0000177 all species → | Cellular Component | cytoplasmic exosome (RNase complex) | Interproscan |
| GO:0000467 all species → | Biological Process | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0016075 all species → | Biological Process | rRNA catabolic process | Interproscan |
| GO:0017091 all species → | Molecular Function | mRNA 3'-UTR AU-rich region binding | Interproscan |
| GO:0034427 all species → | Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Interproscan |
| GO:0034473 all species → | Biological Process | U1 snRNA 3'-end processing | Interproscan |
| GO:0034475 all species → | Biological Process | U4 snRNA 3'-end processing | Interproscan |
| GO:0034476 all species → | Biological Process | U5 snRNA 3'-end processing | Interproscan |
| GO:0043928 all species → | Biological Process | obsolete exonucleolytic catabolism of deadenylated mRNA | Interproscan |
| GO:0071028 all species → | Biological Process | nuclear mRNA surveillance | Interproscan |
| GO:0071035 all species → | Biological Process | nuclear polyadenylation-dependent rRNA catabolic process | Interproscan |
| GO:0071038 all species → | Biological Process | TRAMP-dependent tRNA surveillance pathway | Interproscan |
| GO:0071042 all species → | Biological Process | nuclear polyadenylation-dependent mRNA catabolic process | Interproscan |
ENSODKP00000005298.1.
