Gene detail

Detailed information of ENSODKP00000007908.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_047122835.1, exosome RNA helicase MTR4 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Sequence

CDS

Transcript

ENSODKT00000008565

CGCTGAGcttaataaaaaattgcaaaacgtcTCAATCTCAAATTGAAAGACGACCGTAAGGAGCTAAATGCCATGTTGATGTAATATCTTGtctcaaaaatagattattttgaGATATCTGGAGGAGAGTATATTCAGATGAGTGGGCGTGCTGGTAGGCGTGGTATTGACGAGAGGGGTATCGTCATCATGATTGTTGATGAAAAGTTAGAACCAGAAGTCGGAAAGGGACTGTTGAAGggacAATCTGACCCTTTGAACAGCGCTTTTCGACTGACATATAATATGGTTTTGAATTTATTGCGGCTGGAAGAAATCAATCCTGAATTCATGTTGGAGAAATCATtctatcaatttcaaaattatggtGCAATACCAGAAATGATTGATAaaatcaAGAAACTGGAATTCAAACGTGATCTTATCGAAATCCCAAGTGAAGATTCAGTGATGAGCTATTACAAAATACGGCAACAGTTGAAGAAACTAAGTGATGAGTTGCTACATTTTATACATCAACCGAAATATCTGCTACCTTTCTTGCAACCAGGAAGACTGGTTCATGTAAAAAATGGTGACGAAGACTTCGGATGGGGAACAATAGtcaatttccagaaaaaatctcATCAAAAACAGTCATCCAGTAACATCAAACAAGCACCCTTGGAACCACTTTATGTAGTTGAAGTCTTACTCTATTGCAACAAAACACCTAAGAAGTTAGCAGCTGGTGAAGTTCCAATGCCGTGTAACGAGGAAGGGAAAGGAGAGATGCAGGTCGTCCCCGTGCTAAGTACACTTCTTCAGGCTATCAGTAGTGTACGATTATATCTACCCAAGGACTTGCGACCATCGGATGCCAGACATACTGTATATAAATCACTGAAGGAAGTTCAAAAACGTTTCCCAGATGGTTTACCATTATTAGATCCAATAGAAGATATGAATATTAAAGacgataatttgaaaaaaatagtccGTAAAATTGAATCTCTTGAAAATAGACTTTATTCCCACCCTTTACACAAGGACAAAGAACTAGAAACTGTGTATAATTTGTGTCAGAAAAAATGCAGTATAGAGCAAGAAATAAAGGAACATAAAAAAGAGCTGAAGAAAGCAAAAACGATTTTACAAATGGATGAATTGAAATGCAGGAAACGTGTCTTGAGAAGGCTAGGATATGCAACCGCTGGTGACGTCATAGAGTTGAAAGGAAGAGTAGCCTGTGAAGTCAGCAGTGCCGATGAATTATTACTAACAGAAATGGTTTTCAATGGAGTGTTCAATGATTTAAATGCGGAGCAGACTGTTTCCTTACTCAGCTGTTTTGTATTCCAGGAAAAGGGTGACGAATTACCGAAACTTTCCGAAGAACTCGCAGGATCTCTCCGACAAATGCAGGAATCTGCACGTCGTATAGCAAAGATTTCAGAAGAAGCAAAAATGGATATTGATGTAGATGAATACATTGATTCTTTTAAACCGCAAATGATGGACGTTGTGTATTCATGGGCAACTGGGTGCACGTTTGCTGATATCTGTAAAATGACCGATGTTTTTGAAGgAAGCGTTATTCGTTGCATGCGTCGATTGGATGAATTAGCTAGACAAATGTGTCAAGCAGCAAAAGCTATTGGAAATACTGAactcgaaaataaattttcagaaggaATACGTAAAATTAAAAGGGATATTGTATTTGCTGCAAGTTTGTATTTGTAGACTGATCAAATATCGAGGCAATGATTCTCACTGCATCATGAGTTTGTTGAAATAAATAGTAATGAATCAGGCGCAAGTTTTTCATGGTTTAGAAGAAGTGACCGAGAAATGTTCtgacaaaaattatgatgaaaatttcacaaaatcttcagaaaacatCCGTGATTGAGTCCTTTTTTAAGAGAGATACAGGGCTACGGCCAGCAACATACGATAAAGGAAACCTCTTACGGGTGTTTTTCAtggaatattgaaatatttttcagaacctaatgtagtacacgctttttttattataagcaacgcttttttaaaactcagcctcagtgttgcttaggtgttgcttaatacatacaaGGATCATCAGACTGAGACACttgttatatttactatatttgtgtccatgtctagacctagatctatttatgttgtatctatgtgatcaattcttcattttcgttttcatttttattatgattaatcgagtaatctcatgaatacacacttgttcttttgcttatttttatgtactatatttttgattgatattgtggatgaagaatgtgaacaattttcaaatagcatTTTCAGTGtaagggtgttgcttagcattggtttgattttttgccaatttcaacctggcgtcgcttataaaagtgttgcttttaaAAAGAGCTTGTATACCTGTAAACAGCCGTAACACTTCACTAAAGTATAGCTACGTAAAATGCGCCAGAATACGggtaaaaatcgtaaaaatcGTTTGAGATTTAgggaaaactttaagaaaatgtcCTCTAATTTTTATTCTTCCCTTAATTTTTTACAgagacagaagcaaccaccaggggtgttctataaaaacagctgttcttaaaaatttcgcaatattcactggaaaacacctgtgttacaGTCTCAGTTTCTTCTgtgaatattttgagatttttaataacacctattttgaaaaacatctgccagcggctgcttctgcagatA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42285	Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3
Q9CZU3	Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1
O14232	ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mtr4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13234 all species →	MTR4_beta-barrel	Mtr4-like, beta-barrel domain	Domain	Interproscan
PF08148 all species →	DSHCT	DSHCT (NUC185) domain	Domain	Interproscan
PF21408 all species →	MTR4-like_stalk	Exosome RNA helicase MTR4-like, stalk	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan
IPR025696 all species →	Domain	Exosome RNA helicase MTR4-like, beta-barrel domain	Interproscan
IPR012961 all species →	Domain	ATP-dependent RNA helicase Ski2/MTR4, C-terminal	Interproscan
IPR048392 all species →	Domain	Exosome RNA helicase MTR4-like, stalk	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000460 all species →	Biological Process	maturation of 5.8S rRNA	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSODKP00000007908.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.