Detailed information of ENSODKP00000010212.1 in Millepora complanata

Genomic Location: chr11:156195296...156209660
NR annotation: XP_002161536.1, synaptotagmin-7 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9R0N3Synaptotagmin-11 OS=Mus musculus OX=10090 GN=Syt11 PE=1 SV=2
O08835Synaptotagmin-11 OS=Rattus norvegicus OX=10116 GN=Syt11 PE=1 SV=2
Q9BT88Synaptotagmin-11 OS=Homo sapiens OX=9606 GN=SYT11 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008836 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00168
all species →
C2C2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035892
all species →
Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008
all species →
DomainC2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10024
all species →
SYNAPTOTAGMINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000149
all species →
Molecular FunctionSNARE bindingInterproscan
GO:0001786
all species →
Molecular Functionphosphatidylserine bindingInterproscan
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0005544
all species →
Molecular Functioncalcium-dependent phospholipid bindingInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0006906
all species →
Biological Processvesicle fusionInterproscan
GO:0014059
all species →
Biological Processregulation of dopamine secretionInterproscan
GO:0017156
all species →
Biological Processcalcium-ion regulated exocytosisInterproscan
GO:0017158
all species →
Biological Processregulation of calcium ion-dependent exocytosisInterproscan
GO:0030276
all species →
Molecular Functionclathrin bindingInterproscan
GO:0030424
all species →
Cellular ComponentaxonInterproscan
GO:0045202
all species →
Cellular ComponentsynapseInterproscan
GO:0048791
all species →
Biological Processcalcium ion-regulated exocytosis of neurotransmitterInterproscan
GO:0070382
all species →
Cellular Componentexocytic vesicleInterproscan
GO:0071277
all species →
Biological Processcellular response to calcium ionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSODKP00000010212.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora complanata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora complanata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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