Gene detail

Detailed information of ENSODKP00000012458.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_002156054.1, splicing factor 3A subunit 2 [Hydra vulgaris]
Species abbreviation MCOMP · all data for this species · gene families

Sequence

CDS

Transcript

ENSODKT00000013643

AAGATTTGTTTTTAGACAATGATCTGCAAAGTTGAAGATAATGTTAGATAGTAATACTAGATAAAGAACCTTATTTGAATCCGATAGACATGGATTTTCAAAATCGTGCTGGAGGCAAAACGGGCAGTGGTGGTGTTGCATCATGGTCAGAAACGAACCGTGATCGTAGAGAGCGATTGCGCCAGTTGGCTTTAGAAACGATCGACTTGAATAAGGATCCGTATTTTATGAAAAACCATTTGGGCTCGTACGAATGCAAGCTATGTCTAACTCTTCATAACAATGAGGGAAGCTATTTGGCGCATACACAAGGGAAAAAGCATCAGCAAAATTTGGCTCGCCGTGCAGCAAAGGAAGCGAAAGAAGCACCAACGCAACCAGCACCTgagaAAGTCAAAGTTGCTCTAAAGAAGTTCGTAAAAATTGGTCGTCCTGGTTACAAAGTAACCAAGCAACGAGATCCAGATTCTGGACAGCACAGTTTGTTGTTTCAAATTGACTACCCTGAAATAGCAGAAGGCGAACCCAAGCACCGATTCATGTCGGCTTACGAACAACGCATTGAACCCCCAGATAAAGCATGGCAGTATTTATTGTTTGCTGCGGAGCCATACGAAACTATTGGATTCAAATTACCCAGTCGTGAAATCGACAAGTCAGAAAGCAAGTTTTGGACACATTGGAACAAAGATACAAAGCAGttcttcttgcAGTTTTGCTTCAAATTGACTCATGCCCAAATCGCCCAATTACAAAGGGAAGCAGAGGAAAAGGCTGGTAGTCAAAGAAGAGACAATCGTCAATCAGCACCACCAACACGACATCAGATGCCACCTCGTCAAGGCTTAGATATGCGTGTTGGACCAAGAGGTCTACGTATGCCTCCAAGAGGCCCACCACCAAATATGCAGGGGCCACCACAAAGACCTCAAATGCAACGGTCACCAGCGATAGGACCACCTCCTGCTGGACCACCACCCCAAGGGCAACCTGGTCAAGTGCCTGCACCACAGGGTCTACCAGCGCAAGGACCACCACCTGGGCAAGGACCACCAGGCCCAGGGCCTCCAATACAAAGACCCCCAGGCCAAGGGCCCCCAATACAAGGACCACCAAGTCAAGGGCCCCCATTGCAAGGACCACCAGGTCAAGGGCTGCCAATGCAAGGACCACCAGGTCAAGGACCCCCATTGCAAGGACCACCAGTTCAACCTCCACCATCTCAAGGTCCACCACCGAATCAGGGACCTCCAACTCAAGAGTCCTCAAATCAGCCACCCCCAATGCCTGGCCCGCCACCGCAACCTCCACCAATGCCAGTACCTCCACCGCAGAGAATGCCACCACCAATGCCAGGGCCTCCACCACAACCACCTTCAATGCCAGGTCCACCACCACAAGGAATACCAATGCCAGGGCCTCCACCACCTGGGGCACCGCCTCAAGGGCCACCACCTCAAGGACCACCGAATTTACCACCCCCACCTCAGCTTCCTCCGGGTATTCCACCGCCACCTGTTCCTCCAGGTGTAATGCCGATGCCCCCACCTGGCATGCCGCCAATACGTCCACCGCCAAATTTAGATGATAGTGGTGATGTGATCAGACCTCCACCACCATTCCAGCCTCCACCATTGATGCTACCACAGCAGCAAGACGACTACGACAATGAAAATGACTGatatcagtttttcaaaattatgcatgTGTATGTGGCGGAAATATTATTCATGAATATGTAACAAGAAGTAAATCTTGAATACCTTGGACCTTTGTTGAGACGCTCTGTGTGCTAGATAGTAAAATATAGAATCGTAATCGTAAGAAATTGTGCTTCAtgtgttatgaaaaatattgtctTGTAACTGCATCTAATTTACTGCTTTCTTTAAGGAAAGAAGGAGGAGGTTTTAGAAAGTACGTATTTGAAAATCTAATGCAGGGTAGTTTAATTTTAAGCAGGAGATGAGCTCTCTGTAAACAAAACTGCACCTTGGTATTTCAATATCTCCACTGCTTTGGATaacatttatgtaattttttttactaaacatcttttttattagttacTGTGCCATTACTAAATCAATCACAACATTTCCACGAAATGAGTTGATTCCCGTTCGCGTGTCTTCCCGGCACTATACAGTTTGATCTACCATAATCGTCAACCAGATTAACATTTATGTGATTTGATTTGTGTCacttttttagtctaaaatattttacCCATTACATTCCAATGTTGTTTCTTGATCCCCTTGGGGAAAAAAGAAAGTCAAAGGTATTCTGAATGAGATACTGTATTCtgattgttatttactttataCACGGTCAATTTTAAGAAGACGGTCAACAAGAGCAAACCCCATTGACCGGTGTGTCAACTTGATCAAGCGTAATAAAGCGCAATCAAGAACGCGAAGAACTAGAATATTGTTTGTTCACAGAATTTCTCATGGACAATTGGGTAAACAGTTTACTTTCGAAATTTATGAAAGTGAGAGTTATAAACCGACGGGGTTAACGCACATATAAGTGTTGAAGCTGTTGAAGCAGATCTTGTTGAAGTAAGTGAAACAGCAGGATATATGGAGACTAGTAGTAATCCTTCAAATTCAGTTTTCCATTATAAAAAGATTGGCTTTGCTAAAACAACGGCCGTTCTTGAAATGTTACTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15428	Splicing factor 3A subunit 2 OS=Homo sapiens OX=9606 GN=SF3A2 PE=1 SV=2
Q6AXT8	Splicing factor 3A subunit 2 OS=Rattus norvegicus OX=10116 GN=Sf3a2 PE=2 SV=1
A5PJN8	Splicing factor 3A subunit 2 OS=Bos taurus OX=9913 GN=SF3A2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005269 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF16835 all species →	SF3A2	Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR000690 all species →	Domain	Matrin/U1-C, C2H2-type zinc finger	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR052092 all species →	Family	Splicing Factor 3A Subunit 2	Interproscan
IPR031781 all species →	Domain	SF3A2 domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23205 all species →	SPLICING FACTOR 3A SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12826	SF3A2, SAP62; splicing factor 3A subunit 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.