Gene detail

Detailed information of ENSODKP00000012798.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_047122671.1, SLIT-ROBO Rho GTPase-activating protein 3-like [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Sequence

CDS

ENSODKT00000014047

ATGGCTTCAACAACAGCACTCTCAAGAAAAGATAAACAAGTTCTTCAAGAATTTGACAATTCGGTTAGAGATTTCATGCGGCAGTTTAACGAACAGCAAAATATACTGGAAATACGTAcacagaataaaattttcttcgttAACGATTTACAAGAGTTCTTCAAGAGGCGTGCAGAGTATGATTTGGATTACAGCCAAAAACTTGATCGACTCTGTGACAGATTCAGTGAACGGATTTCAAAACAGAGAAATTACTATGGACTTCAGAGaaaagacgGCGCTTCTTATGTAAATCTATGGTCGAAACTTCTAATTGATGGAAAGTTTAAAGCAAGGACGTCGCATAATCTTAAtgaaatttactcaaaaaatttagTGTCTCGTTTAGTAGAATTAGCTGATGATATACAAAGAATATCACGGTTGGTGAAAGAGACGCACAATACTCTACAAAATCAGATAAcatcagaaataacaaaactacaaacagaaatgaaaatgtattttactaGGCACGCAGACAATATTTTCAGTGAAGGCAAATTCCGGGCTTcagaaacagaaaagaaaaaattcgAAGATTCAccacaaaagaaaacaaatgaaaaacgtttgaaaaatttagagaaaaacgTGGAAAAGaaACGCGCAAGGTTTATAGATTCAAAACTGAAATCAGTTAATGCGCGTAATAGTTACATACTTGGTGTCCAGTCCACCTCATCACTTATAGCGAAATATTACAGTAATGATCTGACCGAGTTAATGAAGaaatatgACCATAACTTCCACCACTCATTCTCCTCCACGTTGCAAGCATTTATTGGAGCAGAACTGCGGATGGCAAATGCACAGATTCAGTCGGCTAACTCACTTGCTCAAACGATCTCGATTATGGACGCTAATAATGATATCAAACTGTTTTTAGAAGATAATCAAAATATCTTTCTACCTGTCGTTAAATTTAGTTTTGTATCTCATGCAGATGATTCGACGTCAGCAATTACAGCCGATGACAAAATGGAACACGACCTAAAAGAGGAACAAATAAAACTATGTGAGAAGTTAGCGTCTTATCAAATAGAGCTTTCGGATATTGAATCTTCAATGGAGAAACGAAAGAGGGGTTTAGAGGATATATACAAAAAGTATGATAGTGAAATGAATGGCTTCTATCATAACGATATGACCCCTGTATCTGGTGTAACAGCTGCAGTTGTTTCATCTACTGGCTCTCATACCTCCACACCTCCTCAACAACTAAAAACAGACAAAGAAGAACTAGAACTTGGTTTACTAACAAAATTCCGCGAATATCTCATGGTGCAAAGTGTTCAATCCGGTTGTCAGGCGAAATACGAGTTACTGACCAAGGCGTTAGGTGAAATAGCAGCTAATCCTCAAAAtaaAGTAGTCATTGGGCGAAAACGCAAGGTGCAGTTATTTGGTACCAGTTTAAAGAGTCAACTCGAAGAAACAGGAGAAGAAATCCCAGAGATCGTTGAAAGCTGCGccaaatatattgcaaaatatgggcgAGAGCATCCTGGTATATTTCGTGTTCCTGGTGCGGCACAAGAGATCAGTGAAATGAAAGTTGCATTTGAAGAAGGGCGGGACCCTCTGTCAGGTTTGAACCATTGGAAAGATATCAATGTAGTTGCCGGCGTTTTTCGTTGTTATTTTCGAGAAATGTCTGAACCATTGTTCCCGCAAGAGTTCAACCAAGATTATTTACGGGCAGCAAgtttGACTCGTGTTAATGACCAAATTGCCGAAGCGAAGGTGATTGTAGAGAAAATTCCAGCGTGGAATCTTCATGTCATAAAATatatgttgaagtttttaaaccTaatagcGGGCCATTCAGACCAAAACAAAATGACTGCACATAATTTAGCTGTTGTGTTTGGTCCATCATTATTCCGTGTTAGTAACGATGCACACCTATTGACAAATCAAGGTCAGATTAAtatattcattgatattttgatcaatgaattttatcaaatattcccTGAAGAACCACCGGAGGAAAGCTTTGAAGATCAACCTGACGGTAGGCGCCCTTCTACCGAGGATTATGATGACGACGGGGAAAGAACAGAAGATGAATTGGATAGTGAAGATGTTGGAAAATGA

Transcript

ENSODKT00000014047

GAAAAAATATGGTGGAGGTATCGTTTGACTAGGTGCATCGatcattagaaataattcaaaatatcttcGGCTTCATAATAGCCAATATTGAGGTGAATGTGTTCGTCAGTAAACATGAATATTCAtgtatgatgaaataaaaaccaaacaGTAGGTTTGGAAGGTGTGTACCAAGCCAGGAGGAGCTGTCGTTAGTAACCCGGATCGCGATCAGGCGATAAACTGCAAATTAACCGTTTTTCTTGCCAGATACCAAAGTTAGAGAAAATTATTTAGATATCGACAAATATGGCTTCAACAACAGCACTCTCAAGAAAAGATAAACAAGTTCTTCAAGAATTTGACAATTCGGTTAGAGATTTCATGCGGCAGTTTAACGAACAGCAAAATATACTGGAAATACGTAcacagaataaaattttcttcgttAACGATTTACAAGAGTTCTTCAAGAGGCGTGCAGAGTATGATTTGGATTACAGCCAAAAACTTGATCGACTCTGTGACAGATTCAGTGAACGGATTTCAAAACAGAGAAATTACTATGGACTTCAGAGaaaagacgGCGCTTCTTATGTAAATCTATGGTCGAAACTTCTAATTGATGGAAAGTTTAAAGCAAGGACGTCGCATAATCTTAAtgaaatttactcaaaaaatttagTGTCTCGTTTAGTAGAATTAGCTGATGATATACAAAGAATATCACGGTTGGTGAAAGAGACGCACAATACTCTACAAAATCAGATAAcatcagaaataacaaaactacaaacagaaatgaaaatgtattttactaGGCACGCAGACAATATTTTCAGTGAAGGCAAATTCCGGGCTTcagaaacagaaaagaaaaaattcgAAGATTCAccacaaaagaaaacaaatgaaaaacgtttgaaaaatttagagaaaaacgTGGAAAAGaaACGCGCAAGGTTTATAGATTCAAAACTGAAATCAGTTAATGCGCGTAATAGTTACATACTTGGTGTCCAGTCCACCTCATCACTTATAGCGAAATATTACAGTAATGATCTGACCGAGTTAATGAAGaaatatgACCATAACTTCCACCACTCATTCTCCTCCACGTTGCAAGCATTTATTGGAGCAGAACTGCGGATGGCAAATGCACAGATTCAGTCGGCTAACTCACTTGCTCAAACGATCTCGATTATGGACGCTAATAATGATATCAAACTGTTTTTAGAAGATAATCAAAATATCTTTCTACCTGTCGTTAAATTTAGTTTTGTATCTCATGCAGATGATTCGACGTCAGCAATTACAGCCGATGACAAAATGGAACACGACCTAAAAGAGGAACAAATAAAACTATGTGAGAAGTTAGCGTCTTATCAAATAGAGCTTTCGGATATTGAATCTTCAATGGAGAAACGAAAGAGGGGTTTAGAGGATATATACAAAAAGTATGATAGTGAAATGAATGGCTTCTATCATAACGATATGACCCCTGTATCTGGTGTAACAGCTGCAGTTGTTTCATCTACTGGCTCTCATACCTCCACACCTCCTCAACAACTAAAAACAGACAAAGAAGAACTAGAACTTGGTTTACTAACAAAATTCCGCGAATATCTCATGGTGCAAAGTGTTCAATCCGGTTGTCAGGCGAAATACGAGTTACTGACCAAGGCGTTAGGTGAAATAGCAGCTAATCCTCAAAAtaaAGTAGTCATTGGGCGAAAACGCAAGGTGCAGTTATTTGGTACCAGTTTAAAGAGTCAACTCGAAGAAACAGGAGAAGAAATCCCAGAGATCGTTGAAAGCTGCGccaaatatattgcaaaatatgggcgAGAGCATCCTGGTATATTTCGTGTTCCTGGTGCGGCACAAGAGATCAGTGAAATGAAAGTTGCATTTGAAGAAGGGCGGGACCCTCTGTCAGGTTTGAACCATTGGAAAGATATCAATGTAGTTGCCGGCGTTTTTCGTTGTTATTTTCGAGAAATGTCTGAACCATTGTTCCCGCAAGAGTTCAACCAAGATTATTTACGGGCAGCAAgtttGACTCGTGTTAATGACCAAATTGCCGAAGCGAAGGTGATTGTAGAGAAAATTCCAGCGTGGAATCTTCATGTCATAAAATatatgttgaagtttttaaaccTaatagcGGGCCATTCAGACCAAAACAAAATGACTGCACATAATTTAGCTGTTGTGTTTGGTCCATCATTATTCCGTGTTAGTAACGATGCACACCTATTGACAAATCAAGGTCAGATTAAtatattcattgatattttgatcaatgaattttatcaaatattcccTGAAGAACCACCGGAGGAAAGCTTTGAAGATCAACCTGACGGTAGGCGCCCTTCTACCGAGGATTATGATGACGACGGGGAAAGAACAGAAGATGAATTGGATAGTGAAGATGTTGGAAAATGAAGAAGGggattttgagattttgcagaTCGACGATGCCTTGGTATATTATTCAGGAAATAGAGATGTGGACCataaaagaaatttcttgaatttaaaaacatgatgcccatgcaaaaatatttctttgtttaactattttttcattcaCCTATCCATCCCGTACCTTATCCAAGTATATTTTCTTTCCAGTTTTACCTAGAGTATTGTTTGAATTTGCTTGACCTGACCCTTAAGATCTTGAAAGTCAACGGTAATGCTCCCTTTCTGTTACACTTCCTTTCCATGAAATTAAGGAAGGAAGAGAACGTAATGCATCCTAAAGACGTGGGAGGTCTTTGTGCTAATCAAATTAGCAAGCTTAGTGCCATAGGATACATGAACGTCTGATTTAGGTCAGTTTCCTctactttattttactttatgtAACTgggtcattgtttttctttttttatggttTATTAGTGTTTtgccaaatgatttaaaaattgtaagttttttgaagatcaatgaagTATCAGTGACAGACTTGATTTGCTCCAGCGCTGCAAGCAAAAAGGGCAGGGGAAGAAAAGTACGCATTTCGAAAACTTCAACTGAGCTTTAAcctagccagcatttacttgttcaaaatcaacaatggaaatgCCAGGACAAtgcgtcattgacgtcgttctggtgtctttatcgttaactttgaacagatttcacacattgttttggtgtttccattgttgacttttaacaaataaatgtcagctgggaagctttttgaaggaaaaaatgcaaaaagagaaGCCACTGATTTTTTTCGTAGTTTCATTTAGGGAGTGTTTCCAGCGAAAAGACCATTCTTTATTATATGtatcaaagttaaaataaaaaaatcccgaacTGCACACACCAAGGTGAAGCAACTTCAATGTTTCAGGTTTGGTAAGGTTTTTCATAAGCCCCAGACAGACAGGTCTAGGTTAGGCTTTGGATGGCTgaaattagatg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43295	SLIT-ROBO Rho GTPase-activating protein 3 OS=Homo sapiens OX=9606 GN=SRGAP3 PE=1 SV=3
Q812A2	SLIT-ROBO Rho GTPase-activating protein 3 OS=Mus musculus OX=10090 GN=Srgap3 PE=1 SV=1
O75044	SLIT-ROBO Rho GTPase-activating protein 2 OS=Homo sapiens OX=9606 GN=SRGAP2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004563 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR051627 all species →	Family	SLIT-ROBO Rho GTPase-activating	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14166 all species →	SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030336 all species →	Biological Process	negative regulation of cell migration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20643	RGD1; Rho GTPase-activating protein RGD1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.