Gene detail

Detailed information of ENSODKP00000014955.1 in Millepora complanata

Genomic Location: :...
NR annotation: XP_047124042.1, probable RNA-binding protein 46 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSODKT00000016595

ATAATCGAAGTATTGAATTTTCAACAAGTATGattaatatttcgaaaaaattatcaaatatagaTTTAAATCCTGACATCAACAATAATTCACCAGGAACAATTAATAAACACATCATAAAGCAACATCAACAACCAAAGAAGATCGCAGAAAATGGAACGACAACTATAAAAACTGGAAGAGAAGCTATTGCTGGTTCAGCCAATGAGAAAGCTTTAATTGAACTAATCGAAAGATCAGGTTATCCTATCACACAACATAATGGGCAAAGAAGATATGGACCACCAAacagttttaatgGTCAACCACCATGTCGAGGATGCGAAGTATTTGTTGGAAAACTTCCACGTGATTGTTACGAAGATGAGCTCGTCCCAATTTTCGAAAAGATAGGTCAAATATATGAACTACGTTTGATGATGGATTACAATGGTCAAAACCGGGGCTATGCTTTTGTAGTATATTTCAATAAGCGAGACGCTCAAAAATGTGTACGGACTATTAATAATTATGAAATAAGAAAAGGTCGTTTATTAGGAGTGTGCCAAAGTGTCGATAATTGTCGCCTGTTTATCGGTGGCATACCAAAAAAAGTGAAACGTGATGAAATACTTGAGGAGATATCAAAAGTAACCGACAGTGTAGTAGATGTTATTGTGTATCCATCAGCaacagataaatcaaaaaaccGTGGTTTCGCCTTTGTAGAATACGATCATCATCGTGCGGCTGCTATGGCCCGAAGAAAATTAATGAATGGCAAAATTCAGTTATGGGGCCATCCAATTGCAGTTGATTGGGCAGAACCAGAGCAGGaggttgatgatgaaattatGGAACAGGTGAAGGTCCTATATGTGCGCAATTTACAATTAAGCACCACCGAGGATACTATTGAAACTATATTCAAACAGTTTGCTGAGGTAGAAAGGGTGAAAAAGATCAAAGATTATTGTTTCGTTCACTTTGCTACCAAAGATGGCGCCAGAAATGCACTGGAGAAAATGCAAGgTCAAAAGATTGACGGGTCAGATGTAGAGGTGACTTTAGCGAAACCTGTAGATAAGGAGCATTACCGGCAACAAAGAGCTGTAGCAAAACTTATGCAGATGGCtaatcaatgtcaacaatttCCTCCAGTGCCACCCGAACTATCCCCTTTTAATGGCATACCTCCCTTTAATAATCAAATGCCTGGTATAATGTATCCACCACCATTTTTACCTGGcgGCCAAGTTGGAGTACGTCCTATTGCTCGAGGGCGTGGAAGAACTGCTGCTGGTAGTAGAAGTGCCGGAGGAAGAGCATATGTGCTGAATGGATTCCTACCACAATTACATCCAATTTTACAAGCTTCAGTAGGTGGAACTGTCAATGGTCTCTCTACTAATGTGGGCAGAGGCAATGCACCTCGAGCTACAGAGGTTCTTGAAGAAATCTGCCAGAAAAATCATTGGGGTGCACCGATATATACACTGCATAGTACAGTCACAAATGAGGGACAACTCTTTCTATACAAGGTAACAATTCCTCCGTTGGGCAACACCTATCAACCTCAAAAATTATGTCGAAATGTTGATGAAGCTAAACTTTACGCAGCAGAATATACACTCTCGCAAATTGGTTCAGAAAACAACGCCTCTCCTCAGTTATCACCTGCACCTTTTGTTAGAGTACCGTCAGGAGCGATGAACGGAAGAACAGCCAGCGAAAATGGTAGTCCAGGATTCGCTGGGTATGTTCCTATTACCACACAACCCACTGTTGTCGTCTCTAATGGTGTTGCAAAAGTAACATGGCCTAATGGAGTCCCACCACCACATGGGCCATATTTTGAATATCCAGAGCAAGGTCAGTTCCATCAGTATTAAAAGGAAGAAATCAATATGCCTGGAGAAAATTCTAACTGAACttcaaaaatcagaagcagccaccgaagctattatttaagaaaaggtgttcttagaaatttcgcaaattcacaggaaaacacctatgccagagcctcttttttaataaagttgcaagcctgaagcctgtaactttattaaaaaagagactctggcacagatgctCTCCTgcgagttttgcgaaatttttaacaacaccttttttatagaacacctttgggtgACTGCTTTTTCAAAGTACAAACTTGCGATGGAGAAACgttgataaatacaaaaattgaaaagtaatgcttttttcaaatagatatattagttggaaaaagtttcaattggGGTCATTTTATAGTTAGTGCAAAAAAATCTGCTGTGAGGTATCAACGAAACTAGGATATATTCAGGTATATCAGAACAGGTTTTCACTGACTAGTTACTATTTACATTAAAGAGAGGGATATATTATctctatttatattttatttaaaatgcagtaaaaatacttttttctgacaaaatttttaatataatgaataagaAAATGGTTACTAAATTTCTACG

Protein

Uniprot

Uniprot term	Description
Q5R9H4	APOBEC1 complementation factor OS=Pongo abelii OX=9601 GN=A1CF PE=2 SV=1
Q5YD48	APOBEC1 complementation factor OS=Mus musculus OX=10090 GN=A1cf PE=1 SV=2
Q923K9	APOBEC1 complementation factor OS=Rattus norvegicus OX=10116 GN=A1cf PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14709	DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006535	Family	HnRNP R/Q splicing factor	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24978	A1CF; APOBEC1 complementation factor	-	Messenger RNA biogenesis	ko03019	deepkoala