Gene detail

Detailed information of ENSODKP00000018052.1 in Millepora complanata

Genomic Location: chr2:238315870...238366798
NR annotation: XP_002166297.1, syntaxin-18 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSODKT00000019752

tttagtgaAACTAGAAATTATCATATATCAAATAGTCATTGGTAAAAGTCATGGAAATCACAAAGCTCTTCAAAGCAACGGTCAAGGCTGTCAAGGCACGCAGAAAAGATATTGAGAGACCAAACATACTgccaaaatctaaacaaaaatcaACCAAGAAGAATTTCCACCAATCAGCAGTTGATGTGGCAAGCAGTATCACTAAACTTCGTGATTTCTTGCTCAAGTATCAACTTGAATATCTTGGAGAGTTCAGCCATTTAATATCAGTATCATCACGGATGACAGAGGAAGAGCGAGACCAAATTGATACTGACACACAGACGCTTATCAAATCTTGTTCTTCTGCTATATCTAGCTTGAAAAACGATGTTACTCAACTGAAAGTGGCAGATCAGCACAAACTTCACGCAACTGCTGTTATTGGGCTACTGGAACTTTATTTGAAGGATATATGCAAATTATATGCGAAACAAAGAGCATTTCGAGTCAAGCAAACAGTTGATAGAAATCGCATGTTACGTTTACTACCCGATCCCAAAGACATCTCCAAAGTAAAGAACGGATTAATCAAAGACGATACGTCTTCAATGGAAACAATCACAACAGTGAATATCTCTCCCACAGATAAAACAGTGAGTAcctcttcaacagaaaaaaagattataaaagACACCTTCCAAACAAGCACCATTGATGAAAACAAGGACTGGGAGATGCAACATTCAGTTTCGTTTTCCCCAGAAGAAATACAaatgTTCGAGGAAGAAAACGGGCTCTTGTATTCGGAGTTGAACAGCACAGTGAAAGAAGTCACAAACATCGAAGGAAAGGTGATAGAGATCGGGCGGCTGCAGGAAATTTTCCAAGAGAAAGTGATGTCACAgTCTGCGCAGATTGAGAACATCTACCGGACTGCTGTGAAAACTACAGATAATGTGAAGGAAGGCAATGAGCAGATACGAGAGGCAATCAAGAATAGTGCCACGTTCCGCGTATGGATACTGTTCTTCTTGGTGATGTGCACGTTCTCCTTGCTGTTTCTTGACTGGTATAACTACTGACACAATTCTGTGTAGCTACATAGCTAGTTTGGCGGCATTTGGGGAATGGCTGTAACACCTTAAATTGAAGTACATCGGTACAACTTAAGTTCCAGTATATGGCCGTTTACTTTGAACAATATGTGATAagctaataaaaatgataacGCGCTAGAGTGTCATAAAAGATGAACGAACAATCTCTACGACTTGGAAACAAAGTAACTGCATAAAAAGGATGCTTTTTCTGTGCTAAAGAATTCTTCGGTAAAATGAGGAACATTTTGTGACCTGAAACTGGTATTGCTAGAAGAAATGTTATTGACACTCAGGCCCCAATATTACTGTAgacattaattgaaatcaatGTTATTGACATTCCGAAAATgcaactcttttttctttaggAAATTTGTTTTGTGCACTGGTATACAATTGTTGATACATTTTTCATTCAGAAACCGCCACTTTTACTGCTAAAAAGtaaattaagtagcaaaacacaAATACTTACGCTTGGGGTACCTTTTTACAGGGTAACTCCCATAACTTTCTGGTCTGTAGTGTTTAACGTCGGACGAATTTTGCAGATTTACGGACGTAGCTGAAATTTATCTGTTTTCGTAAATATTGAGGAccataatttttgaaactttatcgATATCAAAGATCCTTCTTAGTATTCTGCAGGATCCCTGCTTCGAGcagggtttttgtttttttcagccATCTAGGATATTTTTTTTGGTGAGAACCACGGCCCTTCTTAGTGTTCTGCAGGATCCCTGCTTCAAGTggggttttttttttgtttttgttttttgtattttgtttttttttgtttttcagccaTTTAGGAGGTTTTGATTGCGAGAACCACGGTAATGGCTCCAGCTGGAAaaatggttaaccctttaagcgccaacctcacaaaatggtcaaacacactcaaaacaattcgtcggctgttgccaaccaattctttgagtgtgtttgaccattttttggggttggcgtTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2W9	Syntaxin-18 OS=Homo sapiens OX=9606 GN=STX18 PE=1 SV=1
Q5REB4	Syntaxin-18 OS=Pongo abelii OX=9601 GN=STX18 PE=2 SV=1
Q8VDS8	Syntaxin-18 OS=Mus musculus OX=10090 GN=Stx18 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005960 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10496 all species →	Syntaxin-18_N	SNARE-complex protein Syntaxin-18 N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019529 all species →	Domain	SNARE-complex protein Syntaxin-18, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15959 all species →	SYNTAXIN-18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08492	STX18; syntaxin 18	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.