Gene detail

Detailed information of ENSODKP00000018476.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_047129261.1, tryptophan--tRNA ligase, mitochondrial-like [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Sequence

CDS

Transcript

ENSODKT00000020180

ttcagattttccatcCTAGATGTCAGGTTTAAAACTTGTGCAATATGTGATTGTGAGAAGAGACCTTATAGACAGCTTGAAATGGCCAGTTGGAGCTGTGATCGCTCAAGCGTGCCATGCTTGCACAGCCGTTGTACATATGACGTATGATGATGAACACACTCAACTATACTTAAGCAAACTTGACAACATGCATAAAGTTGTCCTTGAGGATCCAACGGCGCTACGGGCAAATATATTCGATATGGTGGCGTCATTGCTAGCTTGTGGAATCGATCCGAATAAAAGTATCTTGTTCCAGCAATCGCAGGTTCCATATCATTGTGAGTTAGCGTGGTACCTATCTTGTCTTGCTCCTACAGGACAGCTGAATCGGATGCATCAGTGGAAGgtgaaagggagcaaatcaAAGGGCCATGCGAACCTTGGTCTGTATTCTTATCCAGTGTTGATGGCAGCTGATGTTCTGCTCTACAGAGCAACCCATGTTCCAGTCGGTGAAGACCAAGTGCAGCACTTGGAGCTGACACGAGATTTAAGCGACTCGTTTAATAAAAGATATTCGAAAACATTCCCATTGCCAGATATAGTATTAACAAAATCGCAGCGTATTATGAATTTGAGGGACCCAACCAAAAAGATGAGCAAATCAGAAGCAAACTCTAACACCAGGGTTGACATCACAGACACTCCTGATGTTattgaatcaaaaattaaaaaagctgtaaCTGACTCCACAGCTTACTTAACAGACAATCTTTCGAGAAGAGAAGgtTTAAAGACGATACACTTTTGGGCGCCAGCTTTCAAATGGtgtctTGTGATAGCTGGAATATCGGACATTTACAGACCGGccgaaaaattgagtttttcccaGTCGTTGTCTCTAGCCACAACAGGGATAATATGGTCGCGATACTCTACGGTTATTACACCCAAAAATTGGAATTTGTTTAGTGTGAACATTTTTCTGGCTGGTGTGGGCGTGATGCAGTGTGGTAGGGTGCTAAACTACCGTAAACATCTGGAGAACGAAGGAAAACAGTTACCGCCACTCTTTTAGATAATATAGGGCCACTTACAGGCTTTATTAACGATATTGCAAACTTAAAAGAACTGAGACTTCAAAAAGCAGTTGCGTAAAACTTGGTTATTCGATCTGAGTACTACTTCTTGGAAGTATTTCGCTTGCTTTTTTATACGGTCAAAGATTTTACGTCAAGAGCGGAGAGCGGCAAATCATTGTCCCAATGTtgtgtatttgttgttaatatatatgTGTTGTTTTATGTGTTGTGTAATCATTGATAGGCCTGTGCATTCTGGTATGATTAATGTATTATAATTTTCAGACAGTTGAAGTGAAGTGatagttttaaataattcaacaatttttgaattaatttttaactatCACTATTACTCTATCCTTGCATTATTTGGTGTAAATTAGattgtaaaatgattttttacaaagctatgtaaaaaccaaattaaaataaagtaaataaaaagttaaaaaatgatataatctcAATTATGAATTGTCAAAATAGGAGAAACCAGTGTAAGTGGAGTAAACGTTCTTGTGGAAAGAAACATACAATACCATGAATGAAATGGCACTCctgaagaattttggaaaatttttgcaaagtgtTTTTGCTGAGATCTAATTTAAATACACTGGCGATGCTTGCATGGTAAAATATATTTGCTTGTGAATATTTGGAATTTATTGAATGTCATTTTCTCAGATAAGGTTAAACAAGTTTTTAAGTGCCAATTTTAGTAGCCTAATGAAACGTATTCAATGCCCCATAAGTTCACAAGGAGTCCGCTCTTTCAAACAGGGCTCTTCTGCTAATAACTGACAAAAAAGTCATATCAATAGAATGTGTCTACAGAATGTGTCTACAATATTAGTGTGTATTATGCAGAAGAAGCTTGGCAAATTTTCAGGAATTATAGGACCTTTAATGGCAAATACTTTCTGAATACTGGTATTCAATCAAGTTTCaaacaagtttttgtatttcttgccTGGATTAaagtttttcag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T099	Tryptophan--tRNA ligase, mitochondrial OS=Bos taurus OX=9913 GN=WARS2 PE=2 SV=1
Q9UGM6	Tryptophan--tRNA ligase, mitochondrial OS=Homo sapiens OX=9606 GN=WARS2 PE=1 SV=1
Q9CYK1	Tryptophan--tRNA ligase, mitochondrial OS=Mus musculus OX=10090 GN=Wars2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004173 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03650 all species →	MPC	Mitochondrial pyruvate carriers	Repeat	Interproscan
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF01981 all species →	PTH2	Peptidyl-tRNA hydrolase PTH2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050203 all species →	Family	Tryptophan--tRNA ligase	Interproscan
IPR005336 all species →	Family	Mitochondrial pyruvate carrier	Interproscan
IPR002306 all species →	Family	Tryptophan-tRNA ligase	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR002833 all species →	Family	Peptidyl-tRNA hydrolase, PTH2	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR023476 all species →	Homologous_superfamily	Peptidyl-tRNA hydrolase II domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43766 all species →	TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004830 all species →	Molecular Function	tryptophan-tRNA ligase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006436 all species →	Biological Process	tryptophanyl-tRNA aminoacylation	Interproscan
GO:0070183 all species →	Biological Process	mitochondrial tryptophanyl-tRNA aminoacylation	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006850 all species →	Biological Process	mitochondrial pyruvate transmembrane transport	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004045 all species →	Molecular Function	aminoacyl-tRNA hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSODKP00000018476.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.