Gene detail

Detailed information of ENSODKP00000019287.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_002154989.2, peroxisome proliferator-activated receptor gamma coactivator 1-alpha [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Sequence

CDS

ENSODKT00000021033

ATGACAGAAACATGTACCTACAAGCTTATAGAACAATCGGTAAATGGTCAGCCCCAAAATTCAGCATTGCCGTTGACGGAGGAGttaaACAAAATGAGTGATTGCGAGGTGATCAATGAAGAATCAGCATTGTCTTGTGGCTCAGAAGGAATCCAAGCTTCAGACATAGGAAGCTTGTTAGAGCagtttttggaatatgagcaagGTAGTGACGCAGACCCATCCTCCTACCCAAATTCCTCTTATATGACACCTTGTGGCTCACCAAGAGAATCAGACGACGTTGTATTAGGGCGTTTGATGATAgtacaagaaaaattatcacAGGAAGTTTATGATGATACACCCCCATCCACACCAATACATAATGGCGGTGAGGCTCCACCATCaggtcagaaaattttaaaaagaaaacttggtAGTCTTGCTAGGACTATAAATGGAATTCATCCCAAAGGTGACAACATTCGAATGGCTGATAGTCCAAAGTTTGCCAAGTTTAAGAAAAAGCGTTTAAATAATGAACCTCCACTGCGTAGGTGTGTATCAGGCAGCACTACACCAAAAACAACTTCTCCAAGTGATTTAGTGAGCCCTGAGGAAAAGAAGAGACGTGAAGCAAAACTTATAGAAGCACTTGCTTTGACATTTCCCCATAATAAAAAGTCTGGCAATAAAGGAAATGTGGAAAAAgcgaataaaaaattgaatactaCGAAAAGTGTAAAACAATCAGCAGAACCTTTGCCAAGTAGAATGATGCCAGTTGTGTCAAAGAGattcaaaaataataacgatAGCAGTGAGAATAAAACCTTACAAGAAAATCACAGTGATCCTAGATTGAATAGACCTAATTATGGTGAAAATTCGAACACAACTCATTTAGCTGATATAGGTGTAGGTACGGAAGAGTCTTCCAGAAATTTAAAAGATGTGCCAGCCATTGTTGACATGACTATTGATCACGAAGCTTTGGCTGTTgtaaatgctaataaaaatattactaaacaaactgaagaaattaaacagggaggcattaaaaaagattcaaataataagaaaaatgagaaattagATATTATTGAGCCAAAGGTCGAAGTTGTAGAAGCATGTGCAATGGACAGTAATTTGCAGAACAAAAGTGCTGAAATTGTAAATCATCTGGACAGTAATTTGCAGAACAAAACTACTGAAATTGTAAATCATGTAGAAATTAAAGAAGAACCTCTATCTGATGACAATTCAGCTgcaaaaactaaaccaaaaaagaaaatgccgaaaaattatcgaaaaacgaaaaattttcatGATGCAGCTTCCTCACAAGAATCTACAGAAGCTGGTAGCAGTTCAGATGATGACGACGATGATAGAGAATACAGAAACAGGTATATTAGACGGCGTTCACAGAGTCCATCACCACGACGATCTAGGCCTCATTTAAGGTCAAGAAACTATTCAAGAAGTACTTCAAGAAGTCCAAGACGTTATCGTTCTTATAGCCGAAGTTATTCAGGAAGTTGCTCTAGTTCTAGTAGTCGTTCTCGATCAAGGAGTCACTCTAGATCAGGAAGTCCACTTGATCGAAGTAGGTTGTATGGTGTTGAATATAGTCAGCGTTCTCCTCGTTCTGAGATTGATAAAAACGTTTCTGATATTAAGGAGAAGCTTATTGAACTGTCAAATCCTGTGCCATATGATATTGAACACGAAAGGAAAGTTCAGTTTTTAACAGGGGTCACTACTAAAGGAAATTTCGAACGTAGAAATATCTACGTTGGTGGAATCGATCGGTTGACCTCGAAGTTTGAACTTGCCGAAAGGTTTCGTAGATttggtgaaattgaaaagatCACGTTACATTTTAGAACTAGAGGAGATAATTACGCTTTTATTGTCTACGAGCGTGCAGAAGATGCCACCAGAGCCATCGAGGAAGGCAATGATGATCCTAAGTACCCGAAGCTGGAACTTTGTTTTGGAGGACGAAGGAAATTTGTCGGTGGGAGCTATGTagattttgATGGAAACACTAGCTATTTGGAAGAGTCAGATCTTAGTTCACGTTCTACCAGATGCCCCTCACCGGAAAATGATTATGACGAACTCCTAAAAATGGCCTTAGCAAAAACGAAAAAACGTGAAGTAACGCCAGAATGGACATAG

Transcript

ENSODKT00000021033

CATGTGTTAGCTAGCGATCAAAACAGACATGAGCAGTGTAAGCAGTGAGCCTGGGAGAAATTAAAATCACAATGACAGAAACATGTACCTACAAGCTTATAGAACAATCGGTAAATGGTCAGCCCCAAAATTCAGCATTGCCGTTGACGGAGGAGttaaACAAAATGAGTGATTGCGAGGTGATCAATGAAGAATCAGCATTGTCTTGTGGCTCAGAAGGAATCCAAGCTTCAGACATAGGAAGCTTGTTAGAGCagtttttggaatatgagcaagGTAGTGACGCAGACCCATCCTCCTACCCAAATTCCTCTTATATGACACCTTGTGGCTCACCAAGAGAATCAGACGACGTTGTATTAGGGCGTTTGATGATAgtacaagaaaaattatcacAGGAAGTTTATGATGATACACCCCCATCCACACCAATACATAATGGCGGTGAGGCTCCACCATCaggtcagaaaattttaaaaagaaaacttggtAGTCTTGCTAGGACTATAAATGGAATTCATCCCAAAGGTGACAACATTCGAATGGCTGATAGTCCAAAGTTTGCCAAGTTTAAGAAAAAGCGTTTAAATAATGAACCTCCACTGCGTAGGTGTGTATCAGGCAGCACTACACCAAAAACAACTTCTCCAAGTGATTTAGTGAGCCCTGAGGAAAAGAAGAGACGTGAAGCAAAACTTATAGAAGCACTTGCTTTGACATTTCCCCATAATAAAAAGTCTGGCAATAAAGGAAATGTGGAAAAAgcgaataaaaaattgaatactaCGAAAAGTGTAAAACAATCAGCAGAACCTTTGCCAAGTAGAATGATGCCAGTTGTGTCAAAGAGattcaaaaataataacgatAGCAGTGAGAATAAAACCTTACAAGAAAATCACAGTGATCCTAGATTGAATAGACCTAATTATGGTGAAAATTCGAACACAACTCATTTAGCTGATATAGGTGTAGGTACGGAAGAGTCTTCCAGAAATTTAAAAGATGTGCCAGCCATTGTTGACATGACTATTGATCACGAAGCTTTGGCTGTTgtaaatgctaataaaaatattactaaacaaactgaagaaattaaacagggaggcattaaaaaagattcaaataataagaaaaatgagaaattagATATTATTGAGCCAAAGGTCGAAGTTGTAGAAGCATGTGCAATGGACAGTAATTTGCAGAACAAAAGTGCTGAAATTGTAAATCATCTGGACAGTAATTTGCAGAACAAAACTACTGAAATTGTAAATCATGTAGAAATTAAAGAAGAACCTCTATCTGATGACAATTCAGCTgcaaaaactaaaccaaaaaagaaaatgccgaaaaattatcgaaaaacgaaaaattttcatGATGCAGCTTCCTCACAAGAATCTACAGAAGCTGGTAGCAGTTCAGATGATGACGACGATGATAGAGAATACAGAAACAGGTATATTAGACGGCGTTCACAGAGTCCATCACCACGACGATCTAGGCCTCATTTAAGGTCAAGAAACTATTCAAGAAGTACTTCAAGAAGTCCAAGACGTTATCGTTCTTATAGCCGAAGTTATTCAGGAAGTTGCTCTAGTTCTAGTAGTCGTTCTCGATCAAGGAGTCACTCTAGATCAGGAAGTCCACTTGATCGAAGTAGGTTGTATGGTGTTGAATATAGTCAGCGTTCTCCTCGTTCTGAGATTGATAAAAACGTTTCTGATATTAAGGAGAAGCTTATTGAACTGTCAAATCCTGTGCCATATGATATTGAACACGAAAGGAAAGTTCAGTTTTTAACAGGGGTCACTACTAAAGGAAATTTCGAACGTAGAAATATCTACGTTGGTGGAATCGATCGGTTGACCTCGAAGTTTGAACTTGCCGAAAGGTTTCGTAGATttggtgaaattgaaaagatCACGTTACATTTTAGAACTAGAGGAGATAATTACGCTTTTATTGTCTACGAGCGTGCAGAAGATGCCACCAGAGCCATCGAGGAAGGCAATGATGATCCTAAGTACCCGAAGCTGGAACTTTGTTTTGGAGGACGAAGGAAATTTGTCGGTGGGAGCTATGTagattttgATGGAAACACTAGCTATTTGGAAGAGTCAGATCTTAGTTCACGTTCTACCAGATGCCCCTCACCGGAAAATGATTATGACGAACTCCTAAAAATGGCCTTAGCAAAAACGAAAAAACGTGAAGTAACGCCAGAATGGACATAGAAGCATGGATGAATTCCATTAAAGGGTTATAGTACAGACTGAATTTCTGAAGGAAATTTTTACACTTAATGTTGAGTTGATTGGTCcggacttttctttttttttttccccataaatatcaaaaattaaatttcgtATTATATTAGatgcatatacatacatatagtgTAACATTTTGCTGCAGGACATTTTTCAGTAGCAttcattcagaggtgttctgtaagacaGGTGCTCTGAAACTCttatcaaaattcacaggaaaagcaCATGTGCTGGAGTTCTTTTTCTATAAAGATGTACGCCTcaggcgaaatttttaagaacacattatGATCGATTAAGCGCTCTGGGCGCTTGTGGCTTTTAGGTAGGCgcttatgagaaaaataaaatgaaacaacaaaaagtttcagataagtaaatttttcacaaaaatcacaaaattcctccCAATAAACCTTCTGAAATCggtcacaaaaattttttttttcctttttttcaaattagcaCCTAGTTTAAACTGGGTGGTTAACGGATATGGGCCCTCATATTAAATTCCCCCCAAGGCTGAGCGCTTATTCAGACTGGGCGCTTAATCTGTCATTCATGGTATTTTGAATCTTGGAATGGCTGCATTTTTTACCACTTGGGTAAGTCCTATATTGACTCTAGTGAAAGTCAATCATAAAGgacttgaaaatgatttagtagGTTCTTCTTCGCAATTCTTTAGAGAAAAGCATGAAGCatttttgcagaagcagccaccggcggtgttctgtacaaaaaaagtgttcttaaaaatttcgaaaattccacAGGAATATAGCTGTGCCAGAacctctcttttaataaaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007029 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034605 all species →	Family	PGC-1	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15528 all species →	PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1 PGC-1 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0030374 all species →	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051091 all species →	Biological Process	positive regulation of DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSODKP00000019287.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.