Gene detail

Detailed information of ENSODKP00000019578.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_047127447.1, afadin [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Sequence

CDS

ENSODKT00000021351

ATGGTTCGACCAGTAACTCACATTATATCAGAATGGAGCCAcagtttaaaaagaaagaaatacatgCACCGTAGATCTATATatgaaatTGATAATAGAGACAGTCAGGTGGTAGAAGAGTTACCGATTGAGCGCATCACAATCGATAAGGGTAAAAGCGGACTGGGGCTTAGTATATGTGCAGCTAAGGGAGCCCAATCGGATTTCACGGGGATCTATATAAAAGCCGTCATCAAAGGAGGGTTGGCTGAGAAGGATGGGAGGCTAGAAGCTGGGGACCAAATATTAAGTGTCAACGAAAACGGCTTAGTGGATGTAACACAAACGCAGGCTGCAAAAATTATGGGTAAATCTGGTCCAGTAATTACAATGGAAGTCATCAAAAGAGCAGTATTTTACCATGGGTTGTCCAAACTTATCGAAGAAGACAGCAAAGATGGTCGTAGTAGTTATCCAAACAATGTTGATGGTAGTCGAGAATCTAAAGAAAGGAATAAATCCCAGAGTAATCATTCCCGACAAGCCAGTCAAGGTTCCGTGCAGAACGACCACTCTAGACCACACAGTCGAAATTCTCAGCAAAACGGGCATTCAAGGCAACACAGCCACAGCTCAGTCCATAATGAACATTCAAGGCAACCAAGCCATACTTCTCTACCAGAAAACCACTCAAGAAATCCCAGTAATTTATCGCAGGAATATTATCCTGAAAGAGTAAAATATGAACAGGAAGAACAGCAGAACGATCAGCAGTTTAATGATTCAGATTATGACGAAGATGGTAACTTACTGAGCCAGGAAGAAAAAGCTCGACTTGCGAGGCAGCGTCAACGTCAAATTGAATATGAAGAGAGGCTAGCGAAGTGGGAAGCTCAACGAaagcaagaagaagaagaactgAAACGGCAACAAGTAGAAGAGGAAGCTCTCGAAAAGAAGCGATACGAAgaagaaagaattgaagaagaagaaagaaaagcaagaGAACATGAGGAAGAAAGGAGGCTTGAAGAAGAAGCTGAACGAAGATATGAAGAAGAAGTCCGTAGGAAGAAAGTCGAACGTGAAGAAGAGATAGCAAGGAGACGTCAAGAAGAGGAACGTAAAAGAGCGGAAGCTGAACAGCGTGAAAGAGAAGAAGAAGAGAGAAGAGTGATGGAAGAATTGCAACAATGGGAGCAACAGGAGAAAATacgaaaagaagaagaagctCGACGAAGGAAGGAAGAGGAAGAACTGCAAAGGAGAAAAGAAGAAGAGGAAAGAAGACTGCAGCAAGAAAAACTTGAACGTGAACGAATAAGACgtgaaaaagaagaggctgaGCAAAGGAAGCGACGGGAGGAAGAAGAacgaagaagaaaagaagaagaaaaaagacgcAGGGAAGAAGAGCAGCGAGCTCGAGAACGAGAAGAAGAGGAGAGGCGAATAGCTGAGGAACGATTACGAGCATTGCGTGAAGAAGAAAGGATacgaaaagaagaaatgaaacgAGAAGCTGAAGAAAAAATGcgacaagaaaaaatacgtcttATTGAAGAACGACGGAAAAAAGAGGCTGATGACGCTGAGCGGGAGAAAAGAAGATTCGAGGCCGAAGAGAAACGTCGAATTGAATATGAAAGGCAAGTGGAAAGAAGGAGGCAAGAACAGGAGCAATTGGAAAGAGACAGAATGGAAAGAGAAAAAGCTGCGAGAGAAGAAGAACGGAAACGAAAGGAAGTGGAAGAAAAAGAACGAAGGAGGGAACAAGAAAGGAGGCAAGCTAAAGCTGCAGAGACGGCTATGTCAAGAAACCAACTTGATAAGGAAATGGAAAGTATAGACGATGCATTGCGTGAAGCAGAAAGAATAGCCGCTGAAATGGATTTGTTTATGtttgaagaagaacaaaaaattgaagaagacagtaaaatgaaaaggaaaaaggaaGAACAAGACTGGCAAAACCAATCTTCGATAGTTTCATCTGCTGGCAAGaactCTCCAAGAAGTCCCAGCGAGCAACAGAAAAGatatagaattgaaaataaaccACTTCGAAGATCAGCCTCAAAAGAAAATATACTGGAAACTAATTTGGATAGTATAGACAATGATTCACTACCACCACCACCCGAGGATTTACTTCCCGAGTCACCAATAGGAACAGCACCaccaaactttgaaacaaatatcGATTCCTCAAGCGAAGACGAAGAAATAAACTCAGTACGTTCTTCAACTTACAAGTTTCAACCAAAAAAAGAATCTATTTCTCAACGAGATTATATGCAGCAGCAGCGAGAAAAACATGAACAACAGAGGCGTGAACAGGAAATACTGAGGcgagagaaaatgaaaaagattgaaGAAGAAAGGAGGAAAAGAGAGGAAGAAATGAATATGAAGAAACAAGAAGAAAGGCAGAGGGAAGAATACAGaaaatcaAGAGAAACACAGGAACGCTCTCTTGGTCCAGCTCCAGTGGCAAAACCTAAATCTTTCAAACCAGACTTTTTATATAAAGATAATAACAGAGGTAACGAAGCACCAAAAAATACGCCTTTATATAATGTTTCTACAACGTCAAATACAGCACGGGTAGAGTATTCACCCGATAAGAACACTGTCGTACTTTCTACAAATGAAAGAATGTCATCGGACGAAGAAGACGCTCCACCTCGGCCACCACCACCAAGACCTGGGTCCACAACACCAAAAACGTCACCAGGAGCATCCAACTCAAGCAGATTTAGCTATTCATCTAGGAATGGATATCAGAATCAAATTAATCATAACCGCACCCCATCGAACAGTAGTTTAGGTGCTAATGATAACACGGGTCTAGTACAGAGAcctggaaaaaatgtttataataaagTAACACCACCTCCGGCTACAGTAAATCAGGGAGTAGGAGAACCTGAAGTACTTGATTTCCGAGCTAAAatgaaattgtttggaaaatttcaagGCTAA

Transcript

ENSODKT00000021351

gaagAGAATAATAAGAGCTAGAACAGAAATAAAGTGACAGATAAGATTTCAAGATAACATTAGTAATGGTTCGACCAGTAACTCACATTATATCAGAATGGAGCCAcagtttaaaaagaaagaaatacatgCACCGTAGATCTATATatgaaatTGATAATAGAGACAGTCAGGTGGTAGAAGAGTTACCGATTGAGCGCATCACAATCGATAAGGGTAAAAGCGGACTGGGGCTTAGTATATGTGCAGCTAAGGGAGCCCAATCGGATTTCACGGGGATCTATATAAAAGCCGTCATCAAAGGAGGGTTGGCTGAGAAGGATGGGAGGCTAGAAGCTGGGGACCAAATATTAAGTGTCAACGAAAACGGCTTAGTGGATGTAACACAAACGCAGGCTGCAAAAATTATGGGTAAATCTGGTCCAGTAATTACAATGGAAGTCATCAAAAGAGCAGTATTTTACCATGGGTTGTCCAAACTTATCGAAGAAGACAGCAAAGATGGTCGTAGTAGTTATCCAAACAATGTTGATGGTAGTCGAGAATCTAAAGAAAGGAATAAATCCCAGAGTAATCATTCCCGACAAGCCAGTCAAGGTTCCGTGCAGAACGACCACTCTAGACCACACAGTCGAAATTCTCAGCAAAACGGGCATTCAAGGCAACACAGCCACAGCTCAGTCCATAATGAACATTCAAGGCAACCAAGCCATACTTCTCTACCAGAAAACCACTCAAGAAATCCCAGTAATTTATCGCAGGAATATTATCCTGAAAGAGTAAAATATGAACAGGAAGAACAGCAGAACGATCAGCAGTTTAATGATTCAGATTATGACGAAGATGGTAACTTACTGAGCCAGGAAGAAAAAGCTCGACTTGCGAGGCAGCGTCAACGTCAAATTGAATATGAAGAGAGGCTAGCGAAGTGGGAAGCTCAACGAaagcaagaagaagaagaactgAAACGGCAACAAGTAGAAGAGGAAGCTCTCGAAAAGAAGCGATACGAAgaagaaagaattgaagaagaagaaagaaaagcaagaGAACATGAGGAAGAAAGGAGGCTTGAAGAAGAAGCTGAACGAAGATATGAAGAAGAAGTCCGTAGGAAGAAAGTCGAACGTGAAGAAGAGATAGCAAGGAGACGTCAAGAAGAGGAACGTAAAAGAGCGGAAGCTGAACAGCGTGAAAGAGAAGAAGAAGAGAGAAGAGTGATGGAAGAATTGCAACAATGGGAGCAACAGGAGAAAATacgaaaagaagaagaagctCGACGAAGGAAGGAAGAGGAAGAACTGCAAAGGAGAAAAGAAGAAGAGGAAAGAAGACTGCAGCAAGAAAAACTTGAACGTGAACGAATAAGACgtgaaaaagaagaggctgaGCAAAGGAAGCGACGGGAGGAAGAAGAacgaagaagaaaagaagaagaaaaaagacgcAGGGAAGAAGAGCAGCGAGCTCGAGAACGAGAAGAAGAGGAGAGGCGAATAGCTGAGGAACGATTACGAGCATTGCGTGAAGAAGAAAGGATacgaaaagaagaaatgaaacgAGAAGCTGAAGAAAAAATGcgacaagaaaaaatacgtcttATTGAAGAACGACGGAAAAAAGAGGCTGATGACGCTGAGCGGGAGAAAAGAAGATTCGAGGCCGAAGAGAAACGTCGAATTGAATATGAAAGGCAAGTGGAAAGAAGGAGGCAAGAACAGGAGCAATTGGAAAGAGACAGAATGGAAAGAGAAAAAGCTGCGAGAGAAGAAGAACGGAAACGAAAGGAAGTGGAAGAAAAAGAACGAAGGAGGGAACAAGAAAGGAGGCAAGCTAAAGCTGCAGAGACGGCTATGTCAAGAAACCAACTTGATAAGGAAATGGAAAGTATAGACGATGCATTGCGTGAAGCAGAAAGAATAGCCGCTGAAATGGATTTGTTTATGtttgaagaagaacaaaaaattgaagaagacagtaaaatgaaaaggaaaaaggaaGAACAAGACTGGCAAAACCAATCTTCGATAGTTTCATCTGCTGGCAAGaactCTCCAAGAAGTCCCAGCGAGCAACAGAAAAGatatagaattgaaaataaaccACTTCGAAGATCAGCCTCAAAAGAAAATATACTGGAAACTAATTTGGATAGTATAGACAATGATTCACTACCACCACCACCCGAGGATTTACTTCCCGAGTCACCAATAGGAACAGCACCaccaaactttgaaacaaatatcGATTCCTCAAGCGAAGACGAAGAAATAAACTCAGTACGTTCTTCAACTTACAAGTTTCAACCAAAAAAAGAATCTATTTCTCAACGAGATTATATGCAGCAGCAGCGAGAAAAACATGAACAACAGAGGCGTGAACAGGAAATACTGAGGcgagagaaaatgaaaaagattgaaGAAGAAAGGAGGAAAAGAGAGGAAGAAATGAATATGAAGAAACAAGAAGAAAGGCAGAGGGAAGAATACAGaaaatcaAGAGAAACACAGGAACGCTCTCTTGGTCCAGCTCCAGTGGCAAAACCTAAATCTTTCAAACCAGACTTTTTATATAAAGATAATAACAGAGGTAACGAAGCACCAAAAAATACGCCTTTATATAATGTTTCTACAACGTCAAATACAGCACGGGTAGAGTATTCACCCGATAAGAACACTGTCGTACTTTCTACAAATGAAAGAATGTCATCGGACGAAGAAGACGCTCCACCTCGGCCACCACCACCAAGACCTGGGTCCACAACACCAAAAACGTCACCAGGAGCATCCAACTCAAGCAGATTTAGCTATTCATCTAGGAATGGATATCAGAATCAAATTAATCATAACCGCACCCCATCGAACAGTAGTTTAGGTGCTAATGATAACACGGGTCTAGTACAGAGAcctggaaaaaatgtttataataaagTAACACCACCTCCGGCTACAGTAAATCAGGGAGTAGGAGAACCTGAAGTACTTGATTTCCGAGCTAAAatgaaattgtttggaaaatttcaagGCTAATCCATTTAACTTATATATTCTTCATTGAGTATATTGTCGTTACTTAaaccattgatttttatttcatatttattgtCACCACATagaatatttattgaaataaaatgttttttaaaaggaaaaaatatcatGGGAGAAGCTCTTAATCGTTCTGGGGAGCACTACTGCAATGTAAAGTTAACTCCAAAACGAAACCAAAAAGATGTCAAGGCCAAGAAGAAGGAAAATCTGTTCACACTTTTCGTGGTAATGCTAGCAGAACCGAGCAAACATTGacctgctcaaaatcaacaagagAAGTACTGGcggaaggtgtgaaatatgttaaaagttaacaataaacacaacaACGAGTAGCCActgacgttgctctggtgtctttagtattaactttgaacatagtttacGCCTTTTTCAAGTATTACTGTAGTTGATTTTGgtcagataaatgtttgctgggaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZQ1	Afadin OS=Mus musculus OX=10090 GN=Afdn PE=1 SV=3
P55196	Afadin OS=Homo sapiens OX=9606 GN=AFDN PE=1 SV=3
O35889	Afadin OS=Rattus norvegicus OX=10116 GN=Afdn PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0042918 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR028842 all species →	Family	Afadin	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10398 all species →	AFADIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21877	USH1C; harmonin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.