Gene detail

Detailed information of ENSODKP00000021003.1 in Millepora complanata

Genomic Location: chr3:202795277...202798268
NR annotation: XP_002164476.2, anaphase-promoting complex subunit 4 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSODKT00000022892

CACAGTGGGAACTCCTTTCGTCAGGTGTGTGACAAACCCTGTGCTAGTCATCCAGTACTTAGAGCTGAATGGAGTCCCTTGCGTGATTTGATTGCCGTATTAACGGCAAACGGGGAAGTCAGGTTACACCGCATGCATTGGCAGAGAGTGTGGAGCATTCCTGGGAAGGATCGGAAAGCCACGTGTTTATCATGGCATCCTTATGGTAATTTGGTAGCAGTCGGGTACGACAATGGGGAAATGATATTAGTGGAAATCGAGAAGGCTAACGTTATCCATACCGCTCAGTTTACAGATAAAATAACAACACTGAATTGGAGCACAGGgagcaaaaatattgggaaatataAGGAATGTATCACACAATATTTACCAGAATTTCAAAAGGAGGAAGTTTTAGCAGCAATGCAAAAACTGGATTTGTTATCGACAAATTTGTTTATCACCCTTACTGTGACAACGTCTAAAGGCGTCACCCACTTATACATGAATGGCGTATTTCTAGTGCTTCGATTGACAAGGGAACATTTTCCAGGGAATAATAGTACCTGCGAAATTGTGCAGTCCCACTTGGATATTTCAAAAGGAGTAGTCACGCTATTGTGCAAAGGAAGTGAGgacagaaaatatttcttgttccAGTTCACCTCTGAGATTCTAGCACGTCATGGGGAAGAGTTATTGTTTTTATCGAAGAAATATCTAGCGTGTTCTTGGGTAAATAAATTAAGTGATGCTTGCATGAAGAGCCTTCAGGATACTGCAGAAGATGTTAACTTGAAGATTAACTCGAAACTCAAATCTTTTGACAGCTTATTGGAAGGCTTGGACTCCTCCATAGCGTGTGAATTTACGACTGCATACGCTGTTGGTGTCTCAAGCCCAGAGCTGCAAACATTTTTAACACAGCATTTAACGACGAAGGGACTAGCTCAGTTAGCACAAAACGTGCGAACATGTTATACCAGTTTGAGTAGTGACACTGGAGACGAGTTAGCATTGTATTTACAGCACTTGGTGTCTCACTTCACCGAACTTAATGGCATCGCACAGTGGCGTGAAAAGTTCGGTGTTTTAGGATTAGACAATAAAACTACACGAGAATGCTACACGCTGTTAGTGCAGGTAATGATGAAAGTAAAAGAACTGCTCGCAGTCATTCAAAGTGACATGAAATACTTAGACGTGTTTTTTACTTGGCTTACTGATTTGATTTGCAAAGTAAGTGGGGAGACAAACACCATCAGCGATATTCAGTGGAGTAACGAAGAATATGATACGATTCTTGACTTTTTAGAGTTCCGATTGAATAAATACGAAAATGAGaatggagaaaaagtttataTTGTCGAACGAGTAAGTCAGTTTTTCCAAGCAGAGCCAATAGTCGATATCAATAGTAGTGTCGGTAACGATTGGCTGACCTTTGTTCAAGCGAACGAAGTATTACGTAAGAGCGAATTTATTATCCAACCAGACGAACAAGCTTCTCTTTTGTCCCTATATGAACGATATAAACTTCGATTTCAAAATGTATTTGAGAGTATTTCGACTAGCCTGAGTAACTCATCAGTATTAACTTTATCGACCTGTTTATATCAGGAGGCTAATGATCATAAACGTGAGTGTGAAAGTCTGTTCCAGTTTTACACCAGGGAACAAAGCTTGCTGCTAAATATAGTCGCTTGCACTTGCGATTCTGATAGAAGTTTTTTACTGCAAGTTGGGCCGACTTCGGCTGACGTAAGTTGTTATGGATATATGTTGCAGCATGGTAACGAGATAGAAGGAGACATGAGTATTACTAGCGAAAACATTCGGTACACATTGCGTGATATGAAGTTCTACAATAGCGAACTGATAACTATATTATTTGAGGAGGACAATATGAAGGAAAATCAGGTGCAGACTATATTTGCGCAGCTGCCAATCTCGGACTTACTGCTAAGCAAACCCGTTATGGTCAACTGTGACCCGGAAACTGGAATATTGGATAAAGATTTAGATTTAAGATGGACAGATGCGCTaggtaaaatttcagaattgcgACGTATTGAATTATTCCGTGGAAAATACCTCAGTGTGAATGGGCATACTAGGCAAACTTCATTACTAATATCTCAGAGTGGACGTAGGGTGCGTGTGTTTGACATGAATGGTGAGGACGATGTAGAAGACAATACTGAAGATTCGAAGTTAAATGAAACCATGTCTCAAAATGGCCAgatatactttaaaaaatcttgcagcatttttttgcaaaatttttag

Transcript

ENSODKT00000022892

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O65418	Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007334 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12896 all species →	ANAPC4	Anaphase-promoting complex, cyclosome, subunit 4	Domain	Interproscan
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024790 all species →	Domain	Anaphase-promoting complex subunit 4, long domain	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR024789 all species →	Family	Anaphase-promoting complex subunit 4	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13260 all species →	ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0034399 all species →	Cellular Component	nuclear periphery	Interproscan
GO:0070979 all species →	Biological Process	protein K11-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03351	APC4, ANAPC4; anaphase-promoting complex subunit 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.