Gene detail

Detailed information of ENSODKP00000023946.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_047138041.1, protein lin-9 homolog [Hydra vulgaris]
Species abbreviation MCOMP · all data for this species · gene families

Sequence

CDS

Transcript

ENSODKT00000025901

AACTATGATAACCAATAAGGAATCAgtatttagatttataataacTACCAAGGCATGGAATTCAAAGAAGAAGTACAAATTGACATATCAGAGAATCAAGAATTAGAATTTCCACAGTCACATCAAGAAGTTACAATTTGCCAGGAAGATGATGATGTCACAGCGGAGGCTTTAATGACGTTACATAACTCTGTTCAGAATATTCAAACACAGAATATCTTATATCAGgaaCCTGGAATTGGTGCGCTTGTTAACAGTTATTCAACAGCACCGGTACATGAATCAAATGAAGTGTTGCAAGTATTTACCAGATCAGATAATTCTTATTCATTGAGAGACTTGAATTCAGTCAACCCCATTGTCAATCAAGATCGAATGAAtcatttattaggtaatttaaataaCATACTCAAGCAAAGTGCAGGAAGGCGTTGGGTGTATTATGAATGGTTCTATTCCAATATTGATCGAGCATTGTTGTTAGGGGAGAATGATTTTGAAAGATgtttaaaacaactatttaaaagattaaaaactagGACTTTGACAAAAGTTCAATGGTCGATGATCAGGAGATTAATAGGAAAGCCAAGGCGTTGTTCTTCAgctttttttgatgaagaaagAAGAAATCTGGAAAAACGAAGAAAGAAAATTCGTTTTTTACATCAATTAAAAGGGTTTGAAGTAATGGATAATACCAAGTTCCAAGACTTGCCAGACGAGATTCCTGTACCCACTGTGGTTGGTACAAGAGTCACTGCAAAAGTTAATCCAGAAGGCAATGGGCTAAGGTTATTTACCGGGACTGTGGATGCAGTGGACACAACCAATAATACATTCAGAGTAGGTTTCGAAAGgcAAGGGATTGAATCAAGATCAGTACCTGATATTGAGGTAGCAAGCGAGAAGTACGAATCAATGAATTTGCAATTGTTTATCGTAAAAGAACGACCAAGAATTGCGGGCGTAAATGTCACACCAGAGAAAACGTCAGATAACAGTGTAATAGAAGAGACGGAACTTACAAGTTCTCCTGATATACGACTAACAAAAGCTTTAAACGATGATTTAAATTATGGAGGCTTTCCTGTAAAATTCTTGTTATCGTTGACACAATTATCAAAGCTTGTTTCATTAAAGAAGAAATGTATcgataaattaaaagaatataatgatgaAGCGGAATTAAAACATCCTTTCCAAGAAGGTTATGATTTAGAGTTTCAAAAAGAGTATGCATATATTATTTTAGagctagaaaaaattaataatgaattaaatacaacatttgataatattaaaaattatatgataaaatcATCGCTGGCTTTATTTGATTATTCAACTTTACTGAAACTAGAGTGTGATAATACAGCCAAAGAAATGATACAGCAGTCAAATCATATTGTTATGGACTCGAAGTTAAAAAACCTAATAACAAGTCTTACGTCACTAATGTTACAAATTAGCAAACATTCACATACTAATATGGAAACAACAGATTTATCAGCCATAGAAGATTAtatgaaagtaataaaatcaactttacatttagaaaatgttaatgaatttgaagataaaattgaaacaaatatagGATTCATATTATCAGGCTTACAAGAAGGAAATAGTCTGTtggcaaattttcagaaaaattctaaagctaataatagaaatatttataaagatgACCCAGTAGATATTATTCAAGAAAATGGTATGCTATCAAGTGATGAACTTGAGGaagaaattgaagatgatgaGGATGACGATGATGAGGATATTGAGAGCCTAGAAGAAAATGATGGCAATGATGAAgacatgtaaaatttatttttgtaagagATGGATCAACATTTATTGTGTTTTAGCTTCAGATATATCTGAtagttttcccatgaatttttaTAGGAACAGCTTTATGAGGTAATTGATAAATATTGTGCAAAAAGGCTTTCCTTTAGCTTCCACTGCGCGAAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TKA1	Protein lin-9 homolog OS=Homo sapiens OX=9606 GN=LIN9 PE=1 SV=1
Q8C735	Protein lin-9 homolog OS=Mus musculus OX=10090 GN=Lin9 PE=1 SV=2
Q4R8N2	Protein lin-9 homolog OS=Macaca fascicularis OX=9541 GN=LIN9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005745 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06584 all species →	DIRP	DIRP	Family	Interproscan
PF19438 all species →	LIN9_C	LIN9 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033471 all species →	Domain	DIRP domain	Interproscan
IPR045831 all species →	Domain	LIN-9, C-terminal	Interproscan
IPR010561 all species →	Family	Protein LIN-9/Protein ALWAYS EARLY	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21689 all species →	LIN-9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000003 all species →	Biological Process	obsolete reproduction	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0017053 all species →	Cellular Component	transcription repressor complex	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSODKP00000023946.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.