Gene detail

Detailed information of ENSODKP00000024489.1 in Millepora complanata

Genomic Location: chr3:115625984...115676780
NR annotation: XP_047137886.1, apoptosis-stimulating of p53 protein 2 isoform X2 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSODKT00000026488

ATGAAGGATGACATTTCGATTGCAGCCAGCGGTGCGATGAAGGGCATCAACCGGGCCCAGCTGACGTTGCAAGAGCTCCAAGAGCTTGCCGAACGCCAACGTCAGCAGATCTTGTACAATAGTAAGGAGTTGATGGAGAAACAACAACAACTCATGCAAATGCATGAGAATTTTCGAAATCGTATGAAAGTAAAGAAAGATGAAACCGATAGTCCTAGTGGAAAGCAGCAGAGCAGAACGGAGCCATCAAATAGCCTTCCTCGATCACCCAAATCTCCCAAATCACCAGGTAGTTCTGGTAATCGAGAAAAAGATCAATATGCCAAAATGTTACGGCAGGCTTATCAAAATATGGGTAGATTGCAACAAAGGAATCATATGCAGACTGAAGTCGACATTAAGAAATTCAATAACATTGAATTAGcacaTGAGTTAGAGAAGATCCGTGCAATTTTCAAATCGAAACAAAATGAACTTGCTGAAGCAGTTAAAAAGGTAGATACGTTAACCCATGAATTGGAATCACGTAAAAATGGTGAATCTGGCTGGAAAGATGTCCCAACACCTGAACGTATCAatcgaagaaaaaaaatacaggcagcgaaagatgaattagataggCTTCGGAATGAACTCATAGTTCGTAATGAAATGAACTCTCAGCAAAGTCACCAACTTCAGCTGCAACGTGATATCATTCAAGAGAAGCAACAAGAGCTTCGCCAACTAAACAATCGTATGAATGAACTTGGGAATGCATTACGCAGGAGGCATGGTTCAAATAGTAGTCTCAATTTGTCCGGGAAAGTTCCGAATTATACCCTTATAAATGGCCAACAACCTGGTCTTTTTGCCAGGAATTATTTACACGATACGTTAAATCGTAAAAGAAGCTCGCTTAAATATTTTACGCAAGATATTAACGGAAATGATCTTACGCACGCTGAACCAATAACTCCTAGCTCAAGACCTGGTAGTTCGACGAGTGGCTTTGAAAGTGACGACAGTAGAGACAGTAATAGAAGCACTGAGGGGAAAAGTCCTTACGACAATGCACCGTTAAATGCAAATGTACTATGGCGAAATGAGCCAACGTTAACGAATCTCGAATCAAAACTTAGCGACTCgtcaaaactaaataaatcatCTTACTCTCCATCATCATCTTTATCGTCACTTTCATCAGCCTCGTCAACCACACCTGACGATATAAGCAGACCCGTCTTCGCGTTCAGTAATAAAGATGGGCCTCCTCCGATTCCTGTTCGAACAACACCTGTGGGAGTTCTTATTAATCGAAATGAATCACAaacaaaatcttcacaaaatgaCTTTCTTTCTGATCTGCAAAAACAGCAAGATAAAATTAACCGATTACAGGACGAATTGAAAAGTAGTAAAGATGAACTTAGAATTAATGGTAGTAATAACATTGAAACCAGTTTATATAATGATGCTTCTTTAGTAAATGGATCAGATAagttaaatgataaatataagcAATATGTCGACGCTAATAATAGCAGCTCAAATGAAACattagtcaaaaataaaaaagaaaaaccactTGTGAAACCTAAACCTCAAATTCAGCCAAAACCAGTTCTTGAAGTAAGACCAATAGTACAGAATGCAAAACCAGGAGTTGATCAAACTGACAGGGCAGCTCGACCACCAGTAACGTTTCACGAAGATGAAGATGTTGTCATAGTACCTTCGGCATCGCATCTGTTTAATGGACATAAAGGTGAGGAAAAAGATCGCTTATCGGAACCAAGTCAGTCTTCAGTACGTAACAGTCCGTCAGAACCTGACGATTTCGAACTTTCGTTTGCTGACATTGATGTATTAAATGAAACACAAACGGACTTATGGAGTGGTACTGGTTCAACTTTGTCACAATCGTCTTTTGATAGTGAATCGGATGACTTTGATATCAATGTAGTACCCGTTTTAGTAAGTGTCCCACCAGAATCAATGCCGCCACCTATTTTAATGAAACCTGATAAACCACGAAAaccgaaaagaaaattaatattagatCCGTTTGCATTGCTGTTAGATGCAGCTCTTGAAGGGGAAATGGATACAGTAGTGGAATCACTGAAGAAGGTCCCAGACCCCAGTAAACCTAACCCAGAGGGTATAACTGCTATCCATAATGCTGTTTGTGGTAACCATAAAAAAGTTGTTCGGTTCTTGGTGGAAGTAGGCTGCGATATCAATTCAGCAGACAACAATGGCTGGACCCCACTCCACTGTGCGGCATTTTACAATGACACAGAATTATGCCGCTTCCTGGTTGAACACGGTGCATCGGTTTACGCCACAACTTACACCGATTACCAGACACCAGCACACAAATGCTCACAACTAGATGATAACTACGACGAGTGTTTCGGATATTTACACCAATGCAAAGAAAATGTTGGCCGAATTAGCAATGGTTTAGTTCATACATTATTTGATTACACTGCCGAAAGTGATGACGAGCTCAATTTCCGTTCGGGTGAAGAACTAACTGTCTTACGTCGTGGTGACGCCTTGGAAAAGGAATGGTGGTGGGTCAGAAATCGAAGAGGAGAAACTGGATATGTTCCTTGCAATTACCTAGGGAATTACCCACGTATTGCTGCGGAAGTGTGA

Transcript

ENSODKT00000026488

CTAATTATGATGTATGTGATGGTACTAATTGCTATTGTGGTTATTAAATTACTTTTGCAGTTAGTTAGAGATGATCTTTGATTAACATTGTGTTGGCGTTTTTCAGAAGTTACGAGGTAGATACGGCAGATAAGGATTTTGCACTTATTAAAGAGTTGGATATAGTTTTTGGCTTCAGAAGATGAAGGATGACATTTCGATTGCAGCCAGCGGTGCGATGAAGGGCATCAACCGGGCCCAGCTGACGTTGCAAGAGCTCCAAGAGCTTGCCGAACGCCAACGTCAGCAGATCTTGTACAATAGTAAGGAGTTGATGGAGAAACAACAACAACTCATGCAAATGCATGAGAATTTTCGAAATCGTATGAAAGTAAAGAAAGATGAAACCGATAGTCCTAGTGGAAAGCAGCAGAGCAGAACGGAGCCATCAAATAGCCTTCCTCGATCACCCAAATCTCCCAAATCACCAGGTAGTTCTGGTAATCGAGAAAAAGATCAATATGCCAAAATGTTACGGCAGGCTTATCAAAATATGGGTAGATTGCAACAAAGGAATCATATGCAGACTGAAGTCGACATTAAGAAATTCAATAACATTGAATTAGcacaTGAGTTAGAGAAGATCCGTGCAATTTTCAAATCGAAACAAAATGAACTTGCTGAAGCAGTTAAAAAGGTAGATACGTTAACCCATGAATTGGAATCACGTAAAAATGGTGAATCTGGCTGGAAAGATGTCCCAACACCTGAACGTATCAatcgaagaaaaaaaatacaggcagcgaaagatgaattagataggCTTCGGAATGAACTCATAGTTCGTAATGAAATGAACTCTCAGCAAAGTCACCAACTTCAGCTGCAACGTGATATCATTCAAGAGAAGCAACAAGAGCTTCGCCAACTAAACAATCGTATGAATGAACTTGGGAATGCATTACGCAGGAGGCATGGTTCAAATAGTAGTCTCAATTTGTCCGGGAAAGTTCCGAATTATACCCTTATAAATGGCCAACAACCTGGTCTTTTTGCCAGGAATTATTTACACGATACGTTAAATCGTAAAAGAAGCTCGCTTAAATATTTTACGCAAGATATTAACGGAAATGATCTTACGCACGCTGAACCAATAACTCCTAGCTCAAGACCTGGTAGTTCGACGAGTGGCTTTGAAAGTGACGACAGTAGAGACAGTAATAGAAGCACTGAGGGGAAAAGTCCTTACGACAATGCACCGTTAAATGCAAATGTACTATGGCGAAATGAGCCAACGTTAACGAATCTCGAATCAAAACTTAGCGACTCgtcaaaactaaataaatcatCTTACTCTCCATCATCATCTTTATCGTCACTTTCATCAGCCTCGTCAACCACACCTGACGATATAAGCAGACCCGTCTTCGCGTTCAGTAATAAAGATGGGCCTCCTCCGATTCCTGTTCGAACAACACCTGTGGGAGTTCTTATTAATCGAAATGAATCACAaacaaaatcttcacaaaatgaCTTTCTTTCTGATCTGCAAAAACAGCAAGATAAAATTAACCGATTACAGGACGAATTGAAAAGTAGTAAAGATGAACTTAGAATTAATGGTAGTAATAACATTGAAACCAGTTTATATAATGATGCTTCTTTAGTAAATGGATCAGATAagttaaatgataaatataagcAATATGTCGACGCTAATAATAGCAGCTCAAATGAAACattagtcaaaaataaaaaagaaaaaccactTGTGAAACCTAAACCTCAAATTCAGCCAAAACCAGTTCTTGAAGTAAGACCAATAGTACAGAATGCAAAACCAGGAGTTGATCAAACTGACAGGGCAGCTCGACCACCAGTAACGTTTCACGAAGATGAAGATGTTGTCATAGTACCTTCGGCATCGCATCTGTTTAATGGACATAAAGGTGAGGAAAAAGATCGCTTATCGGAACCAAGTCAGTCTTCAGTACGTAACAGTCCGTCAGAACCTGACGATTTCGAACTTTCGTTTGCTGACATTGATGTATTAAATGAAACACAAACGGACTTATGGAGTGGTACTGGTTCAACTTTGTCACAATCGTCTTTTGATAGTGAATCGGATGACTTTGATATCAATGTAGTACCCGTTTTAGTAAGTGTCCCACCAGAATCAATGCCGCCACCTATTTTAATGAAACCTGATAAACCACGAAAaccgaaaagaaaattaatattagatCCGTTTGCATTGCTGTTAGATGCAGCTCTTGAAGGGGAAATGGATACAGTAGTGGAATCACTGAAGAAGGTCCCAGACCCCAGTAAACCTAACCCAGAGGGTATAACTGCTATCCATAATGCTGTTTGTGGTAACCATAAAAAAGTTGTTCGGTTCTTGGTGGAAGTAGGCTGCGATATCAATTCAGCAGACAACAATGGCTGGACCCCACTCCACTGTGCGGCATTTTACAATGACACAGAATTATGCCGCTTCCTGGTTGAACACGGTGCATCGGTTTACGCCACAACTTACACCGATTACCAGACACCAGCACACAAATGCTCACAACTAGATGATAACTACGACGAGTGTTTCGGATATTTACACCAATGCAAAGAAAATGTTGGCCGAATTAGCAATGGTTTAGTTCATACATTATTTGATTACACTGCCGAAAGTGATGACGAGCTCAATTTCCGTTCGGGTGAAGAACTAACTGTCTTACGTCGTGGTGACGCCTTGGAAAAGGAATGGTGGTGGGTCAGAAATCGAAGAGGAGAAACTGGATATGTTCCTTGCAATTACCTAGGGAATTACCCACGTATTGCTGCGGAAGTGTGATCGACAGCTAGCTTGTGAAGACGAGGAGGAGCTGACACGTATCTGTCAAGATTTTGCGTAGAGTCGTTGAGTGATGCAATCATTGGATATCGTGTCGTAGAGAAAATATGAGACTGCAGTTGGTCTGCATAGAaactaaattattcaaaaatgaaaatgtagttGATGATATataattgtcaatttttaatggcCTGTCTGTAttcaggatttaaaaaaaaatctttacctgccCACGTAAAGTAGTTTACTGCATGGATAATTTAGGAATATCTCAGTAATATTTATATTGAGAATACATCGTAAATAGTtcgtgtaaataaattttatcacttATACGTTTTATATTGGAGATAATTAGATAAGAGAAAGAATTGCGTAAGCTTGAAATTAGTATGTAACTTTCTTGCTGAATCTGCACTTCGGTCTCACAAATAACTAGACGGCATTCTTGGGAAAACTCATACTAATTTCAGTTTTGACttggaaaaattagttttatttttttatacgaattgtaagtaataatttcttttatgtcTTACTGTCTTATTTAATGTTCGGTCAGGAAAATACTGTGTCGGTATGTTAATTGTTGTACGTGTCAGTGTTTGTGTTTTGTACAAAGTAACCTTTCACGACTAACCTGTTCTTAGTATCTCCGTTACTCTCGTAGTATCATATTAAAAAGACAGATATCGCGTTTTTTTAGCCCTTTAGTGCCtaatgtccactaaaaggccatacGTACTTAaccaaacctgcagctttcaccTGCAAGTATGTATGACCGGTTAGTGCACACCAGGCACCAAAGTgttcaaaaaccttttcaaaacgGTGAAACGTTCAATTACACGACGATTTAATAGCAATACTTGATCTTAACCACACGAGTAGAATACAAAAGCTAGACATTAGTAAAGTATTTGATGTTATCATAGCAAAAAGGCAACATTTGGTTTTTAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I1X5	RelA-associated inhibitor OS=Mus musculus OX=10090 GN=Ppp1r13l PE=1 SV=1
Q8WUF5	RelA-associated inhibitor OS=Homo sapiens OX=9606 GN=PPP1R13L PE=1 SV=4
Q96KQ4	Apoptosis-stimulating of p53 protein 1 OS=Homo sapiens OX=9606 GN=PPP1R13B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003766 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR047163 all species →	Family	Apoptosis-stimulating of p53 protein 1/2	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24131 all species →	APOPTOSIS-STIMULATING OF P53 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002039 all species →	Molecular Function	p53 binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17554	PPP1R13B, ASPP1; apoptosis-stimulating of p53 protein 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.