Gene detail

Detailed information of ENSODKP00000027059.1 in Millepora complanata

Genomic Location: chr4:133893772...133918135
NR annotation: XP_047136673.1, NK-tumor recognition protein-like isoform X2 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSODKT00000029198

ATGGATGGTCCACATGGACGTGGCCCACCTCCACCACACATGATGCGACCACCAATGAGACCACCTTTTGAAGGACCATTTGGACCAAGGGGTCCTCCACCAGGTGTTATGGGTCCACCTAACCGAGGTCCACCAAGAGGACCTCCTCCTTATGGACTAAGGGGACCACCACCATTTGGACCAAGGGGACCTCCCCCAAGAGACTGGGGACCAAGAGGGCCTCCACCAAGGGATTTCGGACCATTTGGACCAAGAGGACCACCAATGGACCCAGGACTCCGCGAGGAATTTGGACCTAGAGGACCAATGCCTCCTGATTTTAGAGGACCTCGCCCAGATATGTTTATGGGCCCACGACCATTTGGAATGAGACCCATGGGACCTATTGACAATGGACAGTTTGCAAATGATGATTTTGGTTCACCTGGCTTCAACATTCCTAATGGTGAAGGAATTCCTCATCGACATCCAGAGCAAcatccaagaaaaaaaaacaaaaagaagaagaagcaaaatGTAGAGGATGCCAAATTCCCAACCCAAAAAGCAAAGGAACCAGTGAAAGATTCTTCTTCATCGTCCTCCAGCGATAGTGATGATTCAAACAGTGAACCTAAAAAGGGTAAGGTGTCGTTTGAATCCAGTCAAAAGAATAAAACAGATTTATATGAGATTTGTCAGCTATTTGCTTTAAATACGACATGTTTGCAGAGAGCATACTTGCAGATCCTTATATTTATGCATTTTATAAGTACGTTTATTGTGTTTACAGAATCTCAGCTTCAACGAATGGTGCAGCCAGGACAAGTGTTAGTACGACAAATTATTCCTGGATTAGCACAACCAGTTTATAGGGCAATAACGCTTCCTCCCGGTGGCCAAGTGGTACAGCAGATACCAGCAGGTCAAACTATTCCACAAGCAGTAAATATCCAAGGATTGCCCGGAGTCAGACCAGGTTTGCTGtatcaattgattttttattttgagGTTGTTCAACTTCCAAATACTGCAGCGCCACCTCAAATGCTTCCACAACAAAATCAAATTCAACCAATTCAACCTCCCAATCAAATTCAGCGACCTACAATTATTAACACACCTAACCCAAACCCACTAGCTGGACAGGTCAGACCAGGAGCTCCAGGTCAGCCAGTAATTATACCCAATTCAGCAAGTATTCCGCAAAGCCAGCCGGGTCAAAATTTACAGGCAACACTGCAAGCAAGTCAAGCTTTAATTCTTCAACAGCAGCAACAGTTAGCAGCCGTTCATCAGGCAGCTCAGCAGCAGTTAGTCCTACAGCAGCAGCAACAATTACAAAAGGATCATAGAAGAAGGCGAGACGATTATAGTAATAGGAGTCGAAGATACAACAGAAGCCGATCCCGCTCCATTTCACGTTCACGTTCGCAGTCATGGTCTGGCTCTGATTCGGCATCTCGAAGCCGCTCGTCTGTTTCCCGCTCGGCCTCAAGATCGCCATCTGGAAGTAGGTCGAGGTCGTGGTCATCACCGGAAGGCTCCAGGTCTCCAACTCCACAGAGATCGCATCAACCACGTAGAAGAGATAATAGATATGAAATGAACAATAGGTTAGGGTATTTCGAAGGTTTAAGAAATGGGATGCCAATTTATACAACCCTCTTATATAACTATTTTTTATACCAAAGTATCGGCGCGATAAAGTTTAGCGAATGTGGAAAACTATCATATACTCCGAAGTTTAActtatatattCGCGAGGAGAGAAAAGAATCAAAGTCAAGTCGTGACCACAGCAACAAGGAACCATCTAAAGCATCAGGAGGTGGTGCGGATGTGGGGAATAGGGTCTTGATTAGCTCCCTACCTGCAAGCATGTCGGAAAGAAAGCTGAAACAGCTGATGCAGTCCGTGGGTGAAGTAGAGAATTTGAAGTTGTCGACTACCAGACATAAAGCCTTGGTTGCTTTTACCAAGAGTTCGTTTGCAGTGGCTTGTCGCAAGAAGTTTCACAAaCATGTTATTGACGAATCAAGACTGCTAGTCGAGTTTGCGTGA

Transcript

ENSODKT00000029198

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005468 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23139 all species →	RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000243 all species →	Cellular Component	commitment complex	Interproscan
GO:0008187 all species →	Molecular Function	poly-pyrimidine tract binding	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0030628 all species →	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0089701 all species →	Cellular Component	U2AF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSODKP00000027059.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.