Gene detail

Detailed information of ENSODKP00000028877.1 in Millepora complanata

Genomic Location: :...
NR annotation: XP_012560597.2, uncharacterized protein LOC105846402 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSODKT00000031065

TCTTTTCTCACAAAATCATCTGATTGGTTTTCGCAGAAAGCTCCCTTAAAACAAATCTACTTGACTTGAAAcacaaacatatgattcaataTAACATGGGACATGTaacgaaaaagaaatgaaaaaacaaaaaagcaaaaagaccTTTGTTGTGCTTGATACAGATGCATCATCGATCTTGATTTATTTGGTAGCAAGTTTGACAGAAAAGAAAGAAGGATGAGGcattaattttcaggaaacatcGTGCTGTACAAGGTCACTAGATACTAGTCGGGGAAAAATTGCCATGGACTGTTCGAACTGTGGCGAAAAGCTTGCTGAGGATTCTGAAATATTCCATCCTTCTCTGATTAAGggaaatgtatattttttgaacaaaaaagatctAGAAGCTTCTCTTGGCAAAGGCAGATTGAAAGTTGACGAATTGAAGGAAACAGGACAAATACACTGTCACAGATGTAACTTTAGCGTGGGAAAGATTTTGCTATATGGCCCAAGTAACCAATACGCTATAGCTTTTGATTATGATAAggtgaaaataagtaaaaaaacccAAACTAGACAGGAGCAGtgtaatatatataaagattCACCCGTAGAAAACTATGTAACGCAAGACGCCTTTAAAGACTCAGACTCAGGGAAATGTctcattaaaaaaaaagttatcaaggAGCCAATAAATTTTCCTCAAATGCACAAAGAAACAGATTTTGATTGGATTACGTTATCACTTACAAAGAATCCTTATTGCTATCAGGTTCAAGCTTTTCTAGAAGGACTACAGAAAAATATCATCGTTGTCTTAAACACAGGAGCTGGTAAAACATTAATTGCTTCCATGATACTGGCCAAAATGTGTCAATTAAACCCAAATCGCATGGGGCTGATGCTTGTCGATAAAGTACCTCTGGCCTCCCAACAAGGAGACGCAATTGCAGAAGACACAAAGTTATCAGTGATCAGTCTTCATGGAAGGAACAAGACAAGAActagaatgaataaattaaatcttGGGTATTATGACGCTTTAGTTGTTACGGCAGGAGcatttaatgaaatgttactaaaagAATATGTAGATGTGTCACTGTTTTGCGCTGTCATTTTTGATGAGTGCcatcatttatcaaaaaaacatctGTATGTTGAAATAATGAAGAAGTTCTTGGCGCAAGAACTGTCGCATCAACCACGAATAATTGGATTAACAGCATCTCCATTTGCAGGAGATAATAACGAGGAAGCtgagaagaatttaaagaaattcaaaaaacacttTCCCAATGCTGAAATATATTCTCCAACATTAGAACTACCCCATCAGAGAACGAAGAAAgaattaatatcattatcacaggaccaaaaaagcttcaaaaaactagttattgatacaattaatcaACAATTAATCAAGTTTGCCAAAGATTTTCCTCTTGAAAACAACTGCCTTAAGATGGATTTAAGTAACAATGGTCAGATCATCGGGGATTTACGAAGAATTCAAAAAGATTaccctgaaaaagaaaatgacaagGATTTCAGTCATGTATTAATTTTGATAGATGCTTTAGAATTCTGTGTTTATTTTGGAATACCTAGTGCatgtaaatttcttaaagataaagACTTTTTGGAGAATATACCTGAACAATTTCATCGTGTAACAGATATCTCTCAGCGGTTGCAAAAGTTGAATTCATACCTTGAAACCGTAAAAGAAGATTCaagaatacttgtatttgttgATAAACGATTTATGGCAAGATTTTTGACCGAAtggattcaaaaaaaatttccagatttAAATGCTCAGGCTGTTGTTGGGCATTCAGGTTCTGAAGGTATGGCATGGACAACTCAGCaaaaagttagtattaataaGTTTGCCGAAGGACGTTCACGACTAATAGTCTCAACCTCTGTGCTGGAAGAAGGGCTTGATGTTGCACAGTGTGATTTAGTTGTTGCATTCACAGGGTCCCGATCTTTGATAACTTTCATTCAAATGCGTGGTCGTGCACGAAAGCAAGATTCTGTTTTTGTCATACTTGAAGCAGaaggacaaaaaaaaacaaagaaagatgtTCAAAAGCAAGAGGTCGTAATGAGAGAGGTATTAGAAACACACCACAGAACTCATTTTCCGGATTCCGCTAAGCAGGAAGAAATATAAACTTGCGTGAATCCAATGAAAATGTGACAGATAATAGCAACTGAACGGGATAATCAGCCTTTGACAAAAAGCTTAACTTTTGCACTTTTTATTGATCTCTCACAAGCTATTGATTTGCAGAAAACGAAGGGCCATGTTAGAGTAAATGCAAAAACTATAAAAccataaaaaccataaaaactataaaaactatttgaagaATATTAGAGCTTGCTTCGTAACTCATTTTAGGGTAATGTTCCATTTCAATACCTCTTGAAAACCTATGGGCTATAGGATTGGAACACCAGCCTGAAATGGGTTGAAATACTTAACaaagtcggcaattacatgttcaaagttaacaataaaaccactagaacaaggtggaaaatatgttcaaagttaacaataaggacacaaGAACTTATgtcttatgtctttattgttaactttgaacatatttcacaccttgttctagtgttttcattgctaactttgagcaggaaaatGCCGGCTGGAAAATAATCATTACTCATATTTTATGCGTCACCAACTCTACATTTCATTCAGTTCTTTAGAGGTTAATTGAAGATTCTTCACATTGTTACATTGAATTAGCTGACGTAGTGATCCAAGAATGAtcaaatatacagaagcagttgtccagaggcaGTCATGAAAAGCCTGctctgaaaagtttcacaaaggttccaggaaaacaactgtgcggGGCTCTCTTTCCTAATAGAGTTGCACGTGGTGGGTTTAGAACTGCAAGCTTACTAAAAAAGGGACTCCATTGGAGATGGTTTTCtttgaatttcgtgaaattttcagaacagctagtCTATAGAACACTTGTGACTGAGAGCCTGAGGATTCAATGGAAACACAACAAGTTTTTTGAGACAGATCTCCACtttggatatttttaaaattgtctaacCGTAGTAGAACATTCGGACAAAAGCTTAAAACTCGAGTTAACTCTCGGTATTCAGTTGACATGAAGCTGAC

Protein

Uniprot

Uniprot term	Description
Q2VF19	Dicer-like protein 1 OS=Cryphonectria parasitica OX=5116 GN=DCL-1 PE=3 SV=1
Q0UI93	Dicer-like protein 1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL1 PE=3 SV=2
Q3EBC8	Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g03300 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10875	RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein	EC:5.6.2.-	DNA repair and recombination proteins	ko03400	deepkoala