Gene detail

Detailed information of ENSODKP00000029944.1 in Millepora complanata

Genomic Location: :...
NR annotation: CAB4023777.1, Transposon Tf2-9 poly, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSODKT00000032195

TTGACGACGAGTTCAAAGGAACCCATTAATATGGCTTTACAAACACCAACAGTTCCACCCTTCAAACCTTATGGTGATCAAAATACAGTAGCTCAAAGATGGGCACAatggaaaaaatcatttaattattttggcaGAGCTTCAGGCATAGCAAATGAAGATAGAAAACAAGCacttttaatgcatttaataggTCCAGAGACACAAAAGATATATGAAACgataaatcaaacacaaaatcaaaCATATGAGGAAACATTAACAACATTAAATAAtcactttgaaatacaaaaaaacgtACCATTTGAGCGATCTGTCTTCCATAAAGCTGAACCAAAATCAGGAGAAAGCGTTGAGCAATTTGTGACACATCAAGTAATATCTACATGCGAATCTACAAAATTACGAAAACGATTATTAACAGAAACAAATCTTGCATTAAACAAAACATTAGCAATAGCGAATGCAATGGAAAATGCTGCATTATTATCAAGCAAAATAGaagaaacaaaggaaaataatgaatttgcacACAAAATTGGTCAACAATATCACAaaccacaaaataaaaattatagaaaaaagcaTTATCCACAAAATCAATACCAGCATCAACAAAGATCAACACCCAATAATAATACACAATCACGTACAAGATGTGGAGCCAAAGGTCACCATGCAGAAGTTTGTCGACGAAGTAGAGGAAAAATGTGCAACAAATGTCAAAAAGTAGGACATTTTACCGAAATACAACAACCACCAACACAACAATCATCAGACGAGGACAATCCCTTGGTATTCATAGtcagaaaacaacaacaaacatttCCAGTCACGAtcaacaatacacaaatagacatgATTATAGACTCAGGGGCAACAGTTAATATAATAGATGAACCAACATATAAGAATATCACTAATCCACCACCATTAAAGCAAACCACTACAAGAATCTTCTCATACCTATCTGATAATCCAATCGACTTACTAGGACATCTTACAACCAATATTTCAtgcaacaacaaaacacaaaaatgcaaaatatatgtAGTAAAAGGAAAATTGGGATCTCTTTTAGGAAAGACATCAGCAGAAGCACTCGTTTTACGTGTAGCACCATCACCATCAACACCAGAAAATATTGCAAACATCCAAACAAACAACAACATGCCAGAATCAACAAAAGCTATAGTAAATGAACATTCATCAATTTTCTCTGGGACAGAACTACTTAAAAACTTCCAACTAAAATTACACATCGACCCATCAATACCACCAGTGCAAGAACTGATACGTAGAATTCCCTATCACACAAAACAGAAAGTATCAGACGAAATTAATAGACTTCTTTCACTTGACATTTTTGGAAAAGTCGAAGGTCCAACAACCTGGTTAAATCCAGTAGTCGCAGCACCAAAACCAAATGGAAAAATCCGAATATGCCTGGATATGCCACAAGCTAATCGTGCTGTTATCAGAGAAAGGCACATTATTCCGAAAATAGAGGACATATTTACTGAATTACATGGAGCAACCATATTTTccaaaatagatttaaaagaaGGTTACCATCAGATTATGCTCGATGAAGAAAGTAGAAATATTACAGCTTTTGTAGTACATGAGGGAATCTTTCGTTTCAAAAGATTAATATATGGAATCAACATAATATCAGATATcccaaatgcaaaaaatataagtgatgatATTCTCATCTGGGGAAAAGCACAAGAAGATTATGACTCAACCCTAACCCTCAAAGTAAACCCATCAAAATGTGTATTCAGTGTCAATAAAATTACCTTTGGAGatccaaataaaatttctgctATCCAAGATATCCAAACCCCATCATCCAATGGAGAATACAAACCAATTGCCTACGGATCACGAGCACTAACCGATACCGAGACAAGATACAGtcaaacagaaaaagaagcactAGCTGTCACATGGTCCTGCCAACATTTTCACTACTACATTTACGATAGACATTCAAACCCTCCTCCACGAATCCAACGTTCGAATCCAGCAGACTGTCTATCAAGAAATCCTAATTTAACCAAAACAACTTCAGatgaaaatattgcagatttatatattaattatgTTACATCAAATGCAGTTCCAGTATCCATGAGTTTGGAAGAAATAGAACAACATACTTTACAAGACAAAATCCTACAACGAGTTACACAaagtttaaaatcaaattattgggAAAAACAATTCAAACCGTATTTTACAATTAGAGATCAGTTAAGTCTACACAATAATATAttactaaaagaaaatcaaatcattataCCATCaacattaacaaacaaaattttacaaatagcTCATCAACAACATCAAGGGATAACAAAAACCAAAGCCCTTTTAAGAACAAAAGTTTGGTGGCCAGCAATCAATCAGGACGTAGAAAATCTTATCCACCATTCCGGCAACCTTTACAAATTACAAATGACTAACTTACCTACTAACATAATTAAACATTTGCAAAAGATATTTACAACATTCGGATATCCAAAGAAATTACGATCTCATAATGGACCACAATTCACTGCAGGGACATTTACTAAGTATTTACAAAGTCACAACACTGAACATAAACCAGCACATGCATACTGGCCCGAAGGAAATGGCGAAGCTGAACGCTTTAATCGTACAATATACAACTTTTTACTTATGTACCGTACCACTCCGCACCCAGCTACAGGCTCGCCACTAGCCCAAATGATGTTTCAGCAGACACCTAACAACAGTATTCCATCAATTCAACAACAATCCAAGCAATCCGAGACAGAACCACACCATAAGCAGTATAagcatcaaattaaaaattatgctgATCAAAAGCGTAGAACAAGAAATCTTGATTTCATTGAAGGTGAAAAAGTATTAGTTAAAGATTTTTCgaaaatgaTCACATTAAAATCCCCAAAAGGAAAAATGATAATTAGAAATAAAGCACATGTTAAAAGATACCATGAACAACAATCTCATCATCCAAAAACACAAATACCGCAAAACAAGAAAGTATTTGACTATGATGTATCAGAAAACCCAATTAACAACAACATAATGCTTATACCAGATTCAGAAATTTACATTCCTCCGGAGAGTGATACCTCAGACACTGAAACGAGATCCTCAAGCATATCGTACTTTAGCCCTATATCCATCTACCATCTTGATTACTCATATAGTTTCTACTTTCACTTTCAATCTTCTTCATCTCATATATCAGTATTTATCCTAGTAATCAATTCCCAGTCTGGAATACTACAGGACATACAGGTGGATTCTATCAAAAATACAAGAACAAAACTTAACAATATACTCAATAGGTGTAGACATGTTGACTGTCTTTGA

Transcript

ENSODKT00000032195

Protein

Uniprot

Uniprot term	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
P03555	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=ORF V PE=3 SV=1
Q02964	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) OX=31556 GN=ORF V PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan