Genomic Location: chr7:33366908...33478386
NR annotation: XP_047127920.1, RNA-binding protein NOB1 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families
| CDS |
| ENSODKT00000039334 |
| Transcript |
| ENSODKT00000039334 |
| Protein |
| ENSODKP00000036270.1 |
| UniProt accession | Description |
|---|---|
| Q4R537 | RNA-binding protein NOB1 OS=Macaca fascicularis OX=9541 GN=NOB1 PE=2 SV=1 |
| Q5RBB3 | RNA-binding protein NOB1 OS=Pongo abelii OX=9601 GN=NOB1 PE=2 SV=1 |
| Q3T042 | RNA-binding protein NOB1 OS=Bos taurus OX=9913 GN=NOB1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006982 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08772 all species → | NOB1_Zn_bind | Nin one binding (NOB1) Zn-ribbon like | Domain | Interproscan |
| PF17146 all species → | PIN_6 | PIN domain of ribonuclease | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036283 all species → | Homologous_superfamily | NOB1 zinc finger-like superfamily | Interproscan |
| IPR033411 all species → | Domain | Ribonuclease, PIN domain | Interproscan |
| IPR014881 all species → | Domain | Nin one binding (NOB1) Zn-ribbon-like | Interproscan |
| IPR039907 all species → | Family | RNA-binding protein NOB1 | Interproscan |
| IPR017117 all species → | Family | Ribonuclease Nob1, eukaryote | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12814 all species → | RNA-BINDING PROTEIN NOB1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004521 all species → | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0030490 all species → | Biological Process | maturation of SSU-rRNA | Interproscan |
| GO:0030688 all species → | Cellular Component | preribosome, small subunit precursor | Interproscan |
| GO:0042274 all species → | Biological Process | ribosomal small subunit biogenesis | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11883 | NOB1; RNA-binding protein NOB1 | - | Proteasome | ko03051 | deepkoala |
Genes whose expression across the transcriptome samples of Millepora complanata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Millepora complanata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |