Gene detail

Detailed information of ENSODKP00000036491.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_047131743.1, retinoblastoma-binding protein 5 homolog [Hydra vulgaris]
Species abbreviation MCOMP · all data for this species · gene families

Sequence

CDS

Transcript

ENSODKT00000039563

TATTGCTAATTAGTGGAGGGAAGTGCAAGGATTGGTAATGACCGACCTCACCCTCCTGCagtttggTCAAAGCTTTCCCGAGGAATTTGATGGGAGTTTAGATTCAGTTAGCCCAGCATTAACCTGTGCATTCAACAGAACAGGTTCATTGCTAGCAGTTGGATGTAATGATGGTCGTTTGGTTGTATGGGATTTCCTAACACGTGGAATCGCGAAAATTATTGCTGCGCATGTGCATCCAATTTCATCTGTAAGtTGGAGTCGCAATGGTCGCAAAGTGCTGACATCATCAACAGACTGGAATGTTGGATTGTGGGATATTTTGTCAGGAGATTGTGAGACAAGATATCGATTTCCGTCAGCCATACATAAAGTACAGTTTCATCCTTTCGACAACAATCAGTTTTTGGTTTGCCCAGTTCGTCATCCGCCTGTGTTGGTCGATGTGAACGGAAAGCATCACATACTACCTGTTGGTGATGAGTGCGAGCAAAACATTGTGGCGACGTTTGACAAAAAGGGTGAATATATTTTTACTGGAAATGCCAAAGGAAAAATAACGATCATTCGTTCAGATACGCTGGAGgtaaaaaattcataccGTATTAGTACAGCTACCAATTCAAATACAGCAATAAAGTCGATTGAATTCTCTAGGAGAGGAAGCTCGTTCCTGGTTAATTCTCAAGATAGAGTGATACGAGTGTTTAATCGAGATTCAGTATTAGCTTATAAAGAAGGTAAAGAACCGGAGGCTACTCAAAAACTACAAGATCTAGTGAATCGGACCTTGTGGAAGAAATGTGCATTCTCTGGGGATGGAGAATTCATAGTAGCAGGTTCCTCTCGGCAACACGCGTTATATATTTGGGAACGAAGCATTGGAAGTTTGGTGAAAATCTTGCATGGAACCAAGGGTGAACTCCTCGTAGATGTTGTGGAAAACTGGTCAGCGTTTGCTCCTGATTTTAAAGAACTTGATGAGAACATCGAATATGAAGAAAGAGAGAGTGAATTTGATTTGACTGATGAAGACAAGGAAGAACAGTTTAATCAATCCAATGACCAACAAGATGAGTTGGAGATCGATGTTGAAACTATAGAGCCACCGTTATATTACAGTAGTGGTGATGAACCAGATGAGGACAGTTTGTTTTACTTACCCGTTGCACCAGATATTGACGACCCTGAAGGGGAAGTTGTACCTGGCTATGATGTTGTACAAAATACATCTTCTGGCAACAAAAACGATGATGATAGTCCTGATAATGGAGAACCTCCTTCAAAGAAGACCAAAATTACAGATGTTGATATAAATGGGGAAGTATacaatcaaaataatttgatggCAGAAAAAGCTGCCGAGAAACCTAAAAGTCGTGGTCAGACATCTTCAAGAGGGAAAAGAGGTGGTCGTAAATCAGGTTCgggaaaaggaaagaaaagtacTAACGTTTCAacaaatgttgatattgaagatGAAAACTCCCAAGATTTTTCTGACTCGAATGCAAACAAACTTTGATACACTAAGCCGATATAGAACTAACTAACAACAGTTTCGAATCTAAGAATTTCTGACAGAAAGTCTTTttaaacagtcatattttggctgtaCGAGATAAAAGCGCTTTAAAGCGGAATAATAGCATATTAGAACTAATAGCAGGAGACAAAGAATGCGCTAGATATAGCTGAACCTCAAATTATTACCATGCCATACTTCTGCATCAGTGCGATCACGGACCGTTATAATTATATGTtcaagtaaacaatagaaagagaCCAGAATATCCTTTTTCCCAGCCGGAAATAACATGTTAAAAGtctgttttctattttgaaagacaataatgaaaatgatgtatGAACCTATTTTAGACCAATGTTCCCTTACTATATACACTCCCGGAAAACAAAACCTctcttttctgatgttttcagggagtataggaaGGAAACATTGAGCTGAAATTTAATAATGTGGTGAATATGTTCAATGTTGATAAAAGCACCAGATACTGCacaaaaaaacgaagttttccattaaggatttcttcagtaagtgtgaccaaattcgcaggaatttgcggatttggccacatttattgaagaaatccttaatggaaaacttcattttttgtgcagtgagaacAACCTTATTTTATGCCAGTCTAGTACCTTTATAGCTGACATCAAAAGCATTCAGcacattaaaccatttcatgccactggtttctttctacaccccctgaaggcatcagaaaacctttggctttctgatgttttcaggggtcaTAGAAAGATCAGTGGCATGATATGGGTTAATTTGGTGAACATGTGAACATGTAATTATCTGGTTGGTTCAAGTGATTCTGGTTCTTTAGTATTACTTTCAAAGAAGAGTATCAAGgactcggaaaatattttttgcatgtaggAAAGTGATGTTGTCGCAGGGATTATTTATTAGAAACAAGATTTGGTTCCAATATCtacttttttgtaaatgaaataaaatatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VPH8	Retinoblastoma-binding protein 5 homolog OS=Drosophila melanogaster OX=7227 GN=Rbbp5 PE=1 SV=2
Q15291	Retinoblastoma-binding protein 5 OS=Homo sapiens OX=9606 GN=RBBP5 PE=1 SV=2
Q8BX09	Retinoblastoma-binding protein 5 OS=Mus musculus OX=10090 GN=Rbbp5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005073 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR037850 all species →	Family	Retinoblastoma-binding protein 5/Swd1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44040 all species →	RETINOBLASTOMA-BINDING PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0048188 all species →	Cellular Component	Set1C/COMPASS complex	Interproscan
GO:0051568 all species →	Biological Process	obsolete histone H3-K4 methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14961	RBBP5, SWD1, CPS50; COMPASS component SWD1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.