Gene detail

Detailed information of ENSODKP00000038596.1 in Millepora complanata

Genomic Location: chr9:74095374...74154070
NR annotation: XP_047141588.1, mediator of RNA polymerase II transcription subunit 15 isoform X2 [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSODKT00000041989

caataatttattttagttaaataCATAGAcacaatttactaaaaattaaaaggaaCAATGACTATACAACCAGAATGGGCTGAAGTGGGCCTACGACAAGTCATGATACAGCAAATtGATGAAACTTATCGGCAATATGGTAATCCAACAAGGAAGACCAGTCAAGAAGTTGAAAAAGCTCTTCTAGACAAAGCTCAATCAAGAGACGATTATCTGCAAATGGGTGCCCGACTGATATTACACATCAAGGAACTTCGTGGAAATCAAACAGCAGCTGCGTTTGCTGCTAACCAACAGCCCCAGAGTGGAGGTGGGACAATGGGTCATATGGTTAATCAGCCAGTCAATGTCAGCAACCAGTTACTGGGTCAGCAAAACTtacaacaacaaattaatttagcGACTCTTCAACAACAGCAAGCAATTGCCAAACAAATTGCTAACGCAAAAGCTGTCAGTTTAAATCAAGGAATAAATTTAAAGCAGACTATGCAAGTATCAACCCAAGGTAATCAAGTTACAAACCAATTACTTACTGGAACGAGGAATCCCGTTGTTATCGGACAACAACAAGGAACCACTATTCAACAAAAGCAACCGTTTTCAGTTAGTGCTGCGCAGCAAGGACAACTTCAAAACCAACTTGCTATGAGCATAATGAATGCAACTAACCCAGTTTCAACTGCAGCTACATTAGCTTTAcaacaacaacaactacaaaACATGCAGAAACAAAACATTCTccagcagcagcaacaacagcagCATCAAACTAAACAACCAACGGAAAATGAGAAACAACTGCTAATGAAGCAATTACAAATCGCTAAGCAAAGACATTTGTTGaatcagcagcagcagcagcaacagcaacaagctcaacagcaacaacagcaacaacagcaacaacaacaacaagcaCAGCAGCAACAAGttcaacaacaacagcaacagcaacaagCTGTACAAAATAATAATGTCCAATTCAACATCCCGAATCAAAAAGCCAATCTTCCAAAACAAGCAGTTCCGCAGAAATCGCCTGCGAAAAGTATGCCAGCTCCGTCACCTCAAGCTCAGCCGCAGCCGTCACCACAAATGCAGACAACACCTTCGCCTGCTTTTATTAATCCACCGTCTGTTGGAACAGCACCAAGCCCCATGACTCACACAGATGAACAAGCATATTTAGAGAAGTTAAAAGAAATGAGCAAATACATCGAACCTTTGGGAAAATTTATCAGCAAAATGCCCAAAGATGAAGagcACGTAAAGGAGATGAGTAAAATGAATGGCTTGTTGGATATGTTAACCAATAAAACCAGAAGGGTCAACATGAATGTACTGAATAAATGTGAAGATGTCTTACGGAGATTATTTAAGGATGTCAGTTCTAGTAATACTTCAATCCCAGACACGACTACTGTGGATTCTATCCCTACACCTGTTGCCAAACCACAGAACCAACTTCAACCACTACGTGAAGTAGTTACTGGTATTATTACATCTGCACAGAATATGTCGGATGCACAGAAGAATATTTTACCTGGAATGTTAGCTCTTAACGCTCCAATGATTGCCCCTCCACCACCTCTTTGCTCACGCAAACGACCACACCCAAGTAATAGGAAGAAGTCTCTTTTACCACGCCCTTTGCAAATGGAAATTGTGCCGTTGATACACAAGTATGGTATCAGTCTCGATCAGTCGAAACCAGCTGACACAGCAGGTGTAACAATGTTATGTCAGTCAAAGAATGAAACATTCCCAATCAGTTTATCCACAATATCCATTCAAGTTCCTGGGGATTATCCGCAGCATGAGCCCAACTACGCATTTCCGGTTGATGATGACaagaacaaaatatcaaaaataacaaatatgatGAACAAGAAATTGGCACGGTATCCACGATCTATAACTTTCACTGCAATACTGCAAGCATGGgAAGTCAGCGTGATAGAGGACCTGATTAATCCGTGAAGTACGGCAGAACTTGTTATAGATGGTGAAAATTTAGTAATGCTTCCTTCGACGTAGGAGAATATGGTAACAGCTTACGCTGTAATTAAGACGAAACCGTTTATTGCAGCAGGTCGTTCTATAAACAGGAGTCAATTTGGAGTACTTACCTTAACGGCTTCCTTTTGCGCTTCCCGTTCAACAGCTCTCGTGGAAATCCATTGTTGTCTGGCGGTATCATAAATTGAAGACTAACAAATGTTGGAATGATACTGCGAGGAGAAGTTTTAAgggaaataataaaggaaatcTTGGCACTTTCAAATGAAAGAATTTGAGAGAGAAATTGGATAATTTGACTAGTAGTAAATAATTGAATGTTTGACGCAGCTGAAAAGACAGAAGTAGCTTTATACAAGTGCTTGAAAATGTGGCTAGAGAAGAATTGTTTTGAGAGTTTCTGAGTACAACtaaggaattttttatttctagtgaATTTAGATACTATCAAAGAAGTGGAAAGCAAGTCTGAATACTTTAAATCAATTAGCGAGTTTGTATTctttgttaacgttgaacatgttTGCCAACTGCTTAACCATTTTCATCCCCAGTGtttgcatttcatgtagaaaccagtaatttgatttgcactgcaaatcaaatgactggtttttatatgaaatataacaatggactgaaatgggttaaccaattTTCAAACCCTTGTTCGaattgaaaaataaggaaaacagAGCGACTTACCTGGATTTTGTTCTGCTACcccaattgttgactttgagcaggtatttacGTACAGGGTGATATGTAGCTTAAATGTGTTTTattcaggtatttctttagggCTCTTCTAGCGTTTTAACACATATTAACCCAAtgctctatttctataccccctggaaacgtcagaaaaccaaacgtatagaaatggaacatttagTTAAAAATGGGCCAATAGCAAtca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q924H2	Mediator of RNA polymerase II transcription subunit 15 OS=Mus musculus OX=10090 GN=Med15 PE=1 SV=3
Q96RN5	Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens OX=9606 GN=MED15 PE=1 SV=2
Q6NS15	Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis OX=8355 GN=med15 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002741 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09606 all species →	Med15	ARC105/Med15 mediator subunit N-terminal KIX domain	Domain	Interproscan
PF21538 all species →	Med15_M	ARC105/Med15 mediator subunit central domain	Domain	Interproscan
PF21539 all species →	Med15_C	ARC105/Med15 mediator subunit C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036529 all species →	Homologous_superfamily	Coactivator CBP, KIX domain superfamily	Interproscan
IPR051187 all species →	Family	Pre-mRNA 3'-end-processing regulator	Interproscan
IPR019087 all species →	Domain	Mediator of RNA polymerase II transcription subunit 15, N-terminal	Interproscan
IPR048385 all species →	Domain	ARC105/Med15 mediator subunit, central domain	Interproscan
IPR048386 all species →	Domain	ARC105/Med15 mediator subunit, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13484 all species →	FIP1-LIKE 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSODKP00000038596.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora complanata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora complanata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →