Gene detail

Detailed information of ENSODKP00000039167.1 in Millepora complanata

Genomic Location: chr8:4245653...4248410
NR annotation: XP_004211504.1, ATP-dependent RNA helicase abstrakt [Hydra vulgaris]
Species Millepora complanata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSODKT00000042753

TGACTTTAGGAGAATGAATAGAAAATTAGATAGAGACTTTAAACCATTGCGAAAATACGAGGAAAAGCCAATCAGTGGAAAAGCAATACACAATGACCATGATGTTGACTTGTTACGTTGCAAATATTCCATTGAAGTGGATGGAGAAAATGTACCCGCACCCTTCGAACATTTTGAGGATACAAAACTTCCGAGAAGAATACTAAATCACCttttacacaagaaaaagttcTCCAAGCCAACCCCAATACAGATGCAGGCATTGAGTTGCATAATTAATAAACGTGATGTTATTGGTCTCAGTCCAACAGGGTCTGGCAAGACCTGTGCGTATTTACTGCcattgtgtttgtttttaaatgaaagtgAAAGTAATCGAGTTAGCAACATGATAGGTAACACAGAACCTTACGGATTAATCATTGTACCAACTAGAGAACTAGTGAAGCAGGTTGGCCAATTGTTGGAGGAACTATTACAGCTATTTTGCCATAGCTCCGAACCATGTCACAGTAACATATCGGAAGTTTCAGATCAGACCAGCCATACCTTTGTTCAGCAAATGCATAGTTTACCATGTTATTCTAATATCAATTCTAATTACCAGGCGTCTCACAACTTTCCATATAGTTTTGCTAATCAACCAAgcaattattatcaacaaacagCTTCCCCACAGAGACCACCGTTTTATCAAAGCATATCCCAAAATCATGTAATGACACCCAATCTCCAAAATAGTCCCCTACCAATTCATTGTGGTCTAGAAGGTGCAAATGGACATGATAATAAATCCAACTTTGTAGCACAAATAACTGGCGGTGTTCCAATTAAAGACAATTTATCTCAGTTTAATAGAAAGACGAAGGTAGTTGTATCAACATCGGGCCGTCTTTTAGATATTCACGGCAAAAACTTACTTTCATTGAATGGTATTCAATATTCAGTTTTTGATGAATGCGATAGACTTTTGGAACTGGGATTGGAAGAACAGTTACgtacaataatatcaataataacacTGGCAGATAGATCACCTCAAGTCACCATGTGGTCGGCAACCCTTCCCCAGTCTCTTGAAAGACTGGTCCGCTCGGCTGTTATAGACTCTGCTTATATTTGCGCAGGAATTCAAGATTGGGTTccattaaatatatttcaagatgTTAGATTTACACATACATATTTGAAACCCTCGTTGCTTTTAGATGTTGTTCGACAAATCCCGTATCCACCAGCGTTATTATTCACTCATTCCAAAGGGAAAGCAGATGAAGTTTGCGCGCTTCTATTTGAAGAGCAGTTCCATGTTGCATCAATCCATTCAGGGAAAGAACAACATGTGAGAAATGAGATAATGGAAGGTTTTCgaaataatgaatttgatattttagttgcGACTGACTTGATAAGTCGTGGTCTTGATATACGAAGTGTCTCTCACGTCATTAATTTCGATACTCCAGATTCCATTGAAGATTATATCCACAGATGTGGAAGAACTGGTAGATTTGGACGGGAAGGAACAGcaacaacttttttaacattaGAATTTAAAATCGCAAAGGAATTAAGGGAAATGTTAGAATCGACTAACAATGCAATACCAAGTGAGTTATGCGATTTTAAAATGTTTGGCAAGAAAATTCTGAAAGCAGAAATGGGGGATTATTACTTgacagaaataaatgaaagttttcagttttattcgTATTTCTGTGTATGCGTGCTTTTATTCGTGATTAGTGTTTGGACTTAGTAAATGGCCTTCATATTCCAAGCAgtgtttaactttttattaagaaataagaaTGAGCTTTAGCGATGAGAATGCTACaaggtttgttttattttgtagttATTCTTGTTGTTGTTCCGGAAAATATCATAGGTGGATatagaactctatcaaacatctaagatggagtgtttcgcgaaaataattaccggctgaaagccgttaactattttcggaaaatgttccaGCTTAGATGGTTTacaagattctgaatacacctgtgAATATAATGATACATGCCACTATGTTGTATCACAGTACGGTCACAGTACGTGAAACTTGATTGATAATGTAGTGATAAATGCTAGTATATTTGGACATATTccttttcaacttcattttcttacatgtcacgtacgcgtttcagagtgaatccacactctatagttttcactaaggaaaagtttattttttgtttttttttattccttatttTTTGTAATCACACAACATCTGCTCTGCAGTTTTATATCGTCTTTTTAAGATTCATGGTAAGCAAATATGAATGATGAGAGTTACCATCGGCAACAACAAGTAAATCTGCTAGACAGCATTATATTTCAAATGGTTCCATTTCAAAACAAATAGATTGATTACTTTTTCATGCGAAGTGATTGTTGAATCGGCGAATGTTGTTTCTGAAGCTTATAAATTCGTTATGAAAGAGTTGCTGCAAGAAGGACGTGTTTTTCCTTTGTGGAAATGATGTAAATTGATATATCTTATCAACAGTGGTGGACTTTGTCCAGACGGTAATTTCACATTAAGCTTGAAAAAAAGGTGTCGCAgatttttaacagaaaatgaaaagtcctgttgttgatacagcagaatttattttacttaaaaaattaacatctttgTCCGGGATCGGTACGGGAAAGATTAAATAGGTGACTTTTAAGACTAGGGGTTGTAGAGAAAGACCAGTGGCATTATATGGTTGAACGCTGCAATGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y7T7	Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp28 PE=3 SV=1
Q9V3C0	ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster OX=7227 GN=abs PE=1 SV=1
Q4I7K4	ATP-dependent RNA helicase DED1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007948 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSODKP00000039167.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.