Gene detail

Detailed information of ENSODKP00000039288.1 in Millepora complanata

Genomic Location: not available for this species
NR annotation: XP_002162097.2, E3 ubiquitin-protein ligase RNF13 [Hydra vulgaris]
Species abbreviation MCOMP · all data for this species · gene families

Sequence

CDS

Transcript

ENSODKT00000042887

AGATTCAAgtaatatttaatcaatatagacaagataaaattaaaacatccGTTATGTGATTGGTCAGAGTATGCATTATATGGAATCGCTTGGCCTATTGTTTTTGGTTTCCATCATCTTGAAAGAAGGATATACAACCGTATACACGATACCGCCAGATCCTGCAAGAAACCTGACGAGCCATTCGTTTCAGGATGAGGAGGCGGACTTTGGAAGTGATATTTCTGATGAAGGATTGAATGGAGTACTAGTAATCGCGCGACCTTTAAATGCATGTATTAGTGTAGCACGTCATAAAGTCAAACATCCTAATGTGTTTGCTTTAGTAGAAGAATCTAAAGACCAGCAACGTTGTCGCTATGATAAGCAGGTCCGGAATTGTCAAAATGCAGGCTACCAAGCAACTATTGTTTACGGTCAGGATAATAAACTTAGAATTATGGCAGGTAATGGGCCATCTATACCTTCAGTGTATGTGACAAAGgacAGTGGTGAAgccttaaaaaaatatacatacaaaaCGGGCGCTTCGATAAAAATTACTCCGAATTCAAAATTACCATTGCAGCTATATTTGATTCCCTTTGCTGTTGTAGTTGCTGTTTGCTTCTTCTTCATGATCATTTTcagtTTGGTACGATATTGCCGCTATCGGTTGAGGCAGAAAAGATCAAGACTTTCcccgaaaaaattaaaaaagatacctACTAAAAAGTTTCAGAAAGGAGATGACTTTGACGTATGTGCAATTTGTTTGGATGATTACGAAGAGGGTGAAAAAATTCGAATACTTCCATGTCAGCACGCTTACCACTGTAAATGTGTTGACCCTTGGCTAACTGCGGGTAAAAAGCTTTGTCCAGTTTGTAAACAATCTGTCGAacctaaagaaaatattgatataaaagatAGAGATGGTGGGACAAGTTCAAGTCCTGAAGATGGCAATCATTCTGACGAAACTGACGATGAAAGTGACGCAGATGAACGGACGCCGTTATTGTCAAGTTCGCGAAGTACGTCTGGCACTATTTCGGTGTGACATGAAAATGACCTAGGTGGGATTATTTAGTCATTAATTTGATGGAATTTTTGCAAATTCAAAGGTACGGCGTCAAGAAGATTTACGATTGCAATTTGGCATTTCTTGGAAAGTTTAATCTCAAGGTGATGGTCACGTGGGCAGTGAAATTATGAAATGGCGTATTAGGTTTACTTGCATTAGTTTCAACCAGTGCAATTTaacagaaagaaataattttagataGCAAGGTGCAAGAATCAGTCAGGAAACAAACTTACCTCTAGACACTAGGGAGTTTCACCTCTCATATGAAAGATCAACCTGGCCTTAATGACATGTACTTCTATAACTTTGacaaataaaactttcataaaagttttttattacaaaacggAACTGTCTTGTTGTAATAAGTCTGTTCAGGCTGAATGGAGCAACAGACATACCAGTTAAAATTGCTTGATAGagtaaaaaaaatgtcttatatgcATATATCTAGATTGCACGAATTATCAAGAACAAGTTATTTTTAGTTGTGCAGATTAACAATGACAGGCATTTGGAATTCTCCAAATGCTTGGAATAGATAAGGTCATACTTGAAATTAATCAGTTCCTTACCAATGTTACCTTTATTTCAGTGCTTTCCAGTGCGAAGGCGTATTCAGGAGCTTGTcaggcatctaagatggagtgttttgtgaaaataactaacgacttttagccgttaactgttttcgcaaaacggtccgtcttagatgttgacagggttctgaatacgcctctgcaatgtTCTGCAGCAGTCATTGCAAAATACTGGAAAGTAATATAACAAAAGGGAACATTTGTACGAAATGGGTTAACCCGTTTGATGCCACTGGTATCTTTCAATAGCCcccgaaaacttcagaaaaccagaggtttttcagggggtttagaaagagaccagtggcatgaaatgggtaaaaGTAAACACTTCGAGTAATAATGAAACGTCTTTCAAGTTTGTATCGACTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIL0	E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1
Q91XF4	E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1
Q0VD51	E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005639 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF02225 all species →	PA	PA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003137 all species →	Domain	PA domain	Interproscan
IPR051653 all species →	Family	E3 ubiquitin-protein ligase and sorting receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47168 all species →	RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for ENSODKP00000039288.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15692	RNF13, RZF; E3 ubiquitin-protein ligase RNF13	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.