Gene detail

Detailed information of ENSOFVP00000001392.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_027057290.1, cleavage and polyadenylation specificity factor subunit 3-like [Pocillopora damicornis]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79101	Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus OX=9913 GN=CPSF3 PE=1 SV=1
Q9UKF6	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens OX=9606 GN=CPSF3 PE=1 SV=1
Q9QXK7	Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus OX=10090 GN=Cpsf3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001366 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11718 all species →	CPSF73-100_C	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	Domain	Interproscan
PF16661 all species →	Lactamase_B_6	Metallo-beta-lactamase superfamily domain	Domain	Interproscan
PF07521 all species →	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF10996 all species →	Beta-Casp	Beta-Casp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021718 all species →	Domain	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	Interproscan
IPR050698 all species →	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR011108 all species →	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan
IPR022712 all species →	Domain	Beta-Casp domain	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11203 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004534 all species →	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006398 all species →	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000001392.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.