Gene detail

Detailed information of ENSOFVP00000002450.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: CAH3031305.1, unnamed protein product [Pocillopora meandrina]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000002715

ATGATGGGAGAAGAAGGCGAGAGTCAAGACATCGAGCTCAAGAACAAAGGAGGAGGATACTTTAACAGAGGACAGCTGGACAGATTCAGGATCAGGGCTAAGGATGTTGGACGGTTGAAAATGCTGCGTGTAGGTCATGACAACTCTGGCTCAAATTCTCGATGGTTGTTAGATGAAGTTGTGATCTACTCGCTGGCTCGTGGTGAACGTTATGTGTTTAAGGGTGGTCGCTGGATCGGCGGACGAAACAATCAAATCGATCTACCATTGGATTCTTGGAACATCGGCCAACTAGTTGGTCAAGAACCGGATATCCCAGATCTTATTGATTTCATGCAGTCTGGAGATGAATTAAAGATTATCAACGCTGCCAGATTCTTGCAACATTTATGTTACAGCAAGGAAACTGTCAAGGACAAAGTCAGAGAGCTTGGTGGCATTCCAGTTATAGTGAGGCTGTTGAGGCATTCTGAATGGCGTGTCAGATATGCTGCTATCTGTCTTCTGAGAAATCTATCTTTCAGCATGAGACACGACGCCAACAGAtTGGCTATCGCTGATTGCGGTGGAATTGAAGCTCTGATTGAAAACTTACAAGAAACCGAGAAGACAGAGtacaGAGAAGCGATTGTGGGCGTTTTATGCAATTTATCGTCTGTTGAGTCGCTTCGTTTAAGAATTCTTCTCGTGTGTCTCCatatcattgtcattatcatcatcgtACCTTACTCCGAGTGGACAGCTGTAGCAGCCCGAGGCCAGCCGCCAGTCAGGAGCGAACCCTGGCCAGCAGTACTCGTCCATGCCACCAGACTCGTGCGCAACCTGTCTTCAGCCGGTACCAGGGCCCGACAGGAGCTCAGAGACGAGAAAGACTTAGTCGACTGTCTGGTGTGGATTACTAGAGTTGGTGTCAAGAGCGAGCAATACGACAGTAGGTGTCTTGAACATTGTGTGTGCACCCTAAGAAACCTGTCATACCGGCTTGAAAGCGAGATTGACAGGGACCGTTATGACGACGCTGACGTGGATGTGGATCCAGCAGCTGTAAAGGAACAACAGAGCCAGGGCTGTTTCGCTGGGTGCGGTGgcaggaagaagaaaaaggTCCCTAACGATAAACGGCCCATGGACCGGCCGAAGGGCCCTCCTCAAGGAGTTGAGTTACTTTGGCAAGCGCAGACAGTTCAACAGTATTATGTGCTTTTACGTAAAGCCAAGAACACTGAAACGTTAGAGGGATCGGCGGGGGCTTTGCACAACTTGACGGCTTGCTCGTGGAAGTGGGCGATCAAGATCCGTGGAGACACAAGAAAAGCACAAGCGATACCTCAGATAGTTGAGCTTTTAAGAATCGATTATGATCCAACAATCCGTGCAGCCGCCATTGCCCTTCGTAACTTGTGTGTCGACCCGGAAAACAGAAGAAGTGTTGGCGAAAAAGCCATACAACACCTGATATTTAGACTCCCAACTGGAGACGAGGAGGAGAGACTGGTGCAGGATCCAACTGTAGCCTCGCTTCTATGTGCCATTTTCCAGCTTACGAACAAAAGTGACAAGAACTGCAAATATCTGCGTAAGACCAAAGGTGTTCAGAAGATAGTGAAGATAGCGACAGATCAGAACAAACAATACTCGCCTCGAGTCATAAAAATAGCTAACCAGGTCTTGAACAACCTCTGGAACCATAGTCAACTACAGCAACAAATAAAGAACGAAGGATGGCAGCCCGATCCTAACAGAACTGCCGAACTAGCTCGAGCGCCGATGGATTACGAAGCTACTTCTCTCCCTCGAACACCCGACGAACGGAACCGAAGAGATCCGAACAGTAGCCGGTTGGAGAGCGACGACGATCAGTGGCGAAGCGGAAGTCGTCGTCGGGATAACTGGGGAAACGTCAATGGCGAGCCATCAGGGGGGACTGACATCTCTTCGGAATCAGATAGACAGCGCAGCTGGAATGAAAACTTGAATCAGATGCCCCCTCCCTACACATCAGATGATAACTATTCTAGGGGGAGTCGCTCACGAGACGACCTCCCCATGGAGGTGATGTCTACTTCGTCACGACGGTCAGCCGCGAATTCAGCACGAGACGAGAACGACAATCCGGGTGACAGGACGCTCAGGTTAAAAGACAGTGGGGGAGGGGATGTGAAGGACGAGGACCTGTGGGTGTAA

Transcript

ENSOFVT00000002715

GTGGAATTCAAGACAGCCTCGGAGGAAAACGCTGGCACGAACGCCAATGTGTATTTCCAAATGATGGGAGAAGAAGGCGAGAGTCAAGACATCGAGCTCAAGAACAAAGGAGGAGGATACTTTAACAGAGGACAGCTGGACAGATTCAGGATCAGGGCTAAGGATGTTGGACGGTTGAAAATGCTGCGTGTAGGTCATGACAACTCTGGCTCAAATTCTCGATGGTTGTTAGATGAAGTTGTGATCTACTCGCTGGCTCGTGGTGAACGTTATGTGTTTAAGGGTGGTCGCTGGATCGGCGGACGAAACAATCAAATCGATCTACCATTGGATTCTTGGAACATCGGCCAACTAGTTGGTCAAGAACCGGATATCCCAGATCTTATTGATTTCATGCAGTCTGGAGATGAATTAAAGATTATCAACGCTGCCAGATTCTTGCAACATTTATGTTACAGCAAGGAAACTGTCAAGGACAAAGTCAGAGAGCTTGGTGGCATTCCAGTTATAGTGAGGCTGTTGAGGCATTCTGAATGGCGTGTCAGATATGCTGCTATCTGTCTTCTGAGAAATCTATCTTTCAGCATGAGACACGACGCCAACAGAtTGGCTATCGCTGATTGCGGTGGAATTGAAGCTCTGATTGAAAACTTACAAGAAACCGAGAAGACAGAGtacaGAGAAGCGATTGTGGGCGTTTTATGCAATTTATCGTCTGTTGAGTCGCTTCGTTTAAGAATTCTTCTCGTGTGTCTCCatatcattgtcattatcatcatcgtACCTTACTCCGAGTGGACAGCTGTAGCAGCCCGAGGCCAGCCGCCAGTCAGGAGCGAACCCTGGCCAGCAGTACTCGTCCATGCCACCAGACTCGTGCGCAACCTGTCTTCAGCCGGTACCAGGGCCCGACAGGAGCTCAGAGACGAGAAAGACTTAGTCGACTGTCTGGTGTGGATTACTAGAGTTGGTGTCAAGAGCGAGCAATACGACAGTAGGTGTCTTGAACATTGTGTGTGCACCCTAAGAAACCTGTCATACCGGCTTGAAAGCGAGATTGACAGGGACCGTTATGACGACGCTGACGTGGATGTGGATCCAGCAGCTGTAAAGGAACAACAGAGCCAGGGCTGTTTCGCTGGGTGCGGTGgcaggaagaagaaaaaggTCCCTAACGATAAACGGCCCATGGACCGGCCGAAGGGCCCTCCTCAAGGAGTTGAGTTACTTTGGCAAGCGCAGACAGTTCAACAGTATTATGTGCTTTTACGTAAAGCCAAGAACACTGAAACGTTAGAGGGATCGGCGGGGGCTTTGCACAACTTGACGGCTTGCTCGTGGAAGTGGGCGATCAAGATCCGTGGAGACACAAGAAAAGCACAAGCGATACCTCAGATAGTTGAGCTTTTAAGAATCGATTATGATCCAACAATCCGTGCAGCCGCCATTGCCCTTCGTAACTTGTGTGTCGACCCGGAAAACAGAAGAAGTGTTGGCGAAAAAGCCATACAACACCTGATATTTAGACTCCCAACTGGAGACGAGGAGGAGAGACTGGTGCAGGATCCAACTGTAGCCTCGCTTCTATGTGCCATTTTCCAGCTTACGAACAAAAGTGACAAGAACTGCAAATATCTGCGTAAGACCAAAGGTGTTCAGAAGATAGTGAAGATAGCGACAGATCAGAACAAACAATACTCGCCTCGAGTCATAAAAATAGCTAACCAGGTCTTGAACAACCTCTGGAACCATAGTCAACTACAGCAACAAATAAAGAACGAAGGATGGCAGCCCGATCCTAACAGAACTGCCGAACTAGCTCGAGCGCCGATGGATTACGAAGCTACTTCTCTCCCTCGAACACCCGACGAACGGAACCGAAGAGATCCGAACAGTAGCCGGTTGGAGAGCGACGACGATCAGTGGCGAAGCGGAAGTCGTCGTCGGGATAACTGGGGAAACGTCAATGGCGAGCCATCAGGGGGGACTGACATCTCTTCGGAATCAGATAGACAGCGCAGCTGGAATGAAAACTTGAATCAGATGCCCCCTCCCTACACATCAGATGATAACTATTCTAGGGGGAGTCGCTCACGAGACGACCTCCCCATGGAGGTGATGTCTACTTCGTCACGACGGTCAGCCGCGAATTCAGCACGAGACGAGAACGACAATCCGGGTGACAGGACGCTCAGGTTAAAAGACAGTGGGGGAGGGGATGTGAAGGACGAGGACCTGTGGGTGTAATACACAGGAGTTTGGGGGAGGATGCAATGCTGACACAGGATCATTTTAAGTTATCAACACAAACAGCTTATTTTAAAAACCTATCGCTTCTAGTCATGAAGAGCCTGGCGATTTGACCGTGTAAATGctgttttgtttcacattacaaaatggaaaatttttgaaatgaTATGCAGGAAGGTGTTTGTAAAATGCTTGTAACTAGTCTCTTCAGACGCTATTCAGTTGTCGGACCTCAGACAACAAATTATAATAACCTCTGTTTATTTGTTAACTATTTACATTGGATTTATCGCACGTGACATTTCACGTTTGAACTTATTATTGCACCGCAAAGCGATCAGTTCCTGATCATTTTTGAAAAGGTTTGTAGAATTTATTTCCTTTCGAAATGATACCTGCTTCATCAACTCGTTTCTAGTTTCTGTAACTTCGCAATTAACTTTAACTATCTTGCCTTCTGTGACTTTTCTCTGAGTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68FH0	Plakophilin-4 OS=Mus musculus OX=10090 GN=Pkp4 PE=1 SV=1
Q99569	Plakophilin-4 OS=Homo sapiens OX=9606 GN=PKP4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003887 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028435 all species →	Family	Plakophilin/Delta catenin	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10372 all species →	PLAKOPHILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000002450.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.