Gene detail

Detailed information of ENSOFVP00000002667.1 in Cyphastrea salae

Genomic Location: chr1:19838942...19869110
NR annotation: XP_020631276.1, enhancer of mRNA-decapping protein 4-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOFVT00000002961

ATGGACGATAATGCAAGAGGAGTGGCCTCTAAAATACTTTGCGACTTGCTTAATATTCCAAAAGGTGGAAGCACGGCCGCTACTGATGATAATCAAGTAAGTAATGGTTTAGAAAGACAAGAAACCGGAGAAAGAGATGTTGATGATTCTATAAGTGAAACAGCATCAACCGCAAGTTCACTTTCACCTTTAAGAAggGGAAAGGGACAAATATCTGATGTGTCTACTTCAGATAGTGAAGGAGTTGCTTCAAGAATGTCTCTTGAACCTGTAAAACAAGTCATACGCATGACAGGCAATGATAACGAAGGTAGTCAGTCAGTATATGGAAGTGAAGTTGAAATTGTAACCAGTGGTTCAGTCACTCCAACAAGTGCTACGGCTAGTAACAAGATTAAGTTTAATTCAATGGTGAATTATGACTGGGAGCTGAGGTATTACAGAGGATGTCTGATAGCTGTCAGCAGCAAGTGTATTGCTTATGCTCTAAGAGGTCGTCAAGGTTATGTTGTAAGGCTCCTTAACCCTGAGACAGCATCTAGGACTCTAATCAAGGGATTTGTTGGCATGATCAGTGAGCTGGCTTTCTCCCACAAAGACTCTAATACCTTGGCATGTGTTGATGAGGGTGGCAATGTTTATATCTGGGTCATCCAGGAAGAAAATGGCAAACTTGAATACTCTGTAAAACTTCACATTAAACGTCCAGCTAGCACACTCTCAGAGCATCACAGACTGATATGGACTCCTTACATGCCTGATACTGAGGAGCAAGAAAGGAGCGAAGAATCCACTGTAGAAGAAGGCCGTCCACTGGCCATCACACATGGAAATCAGGTGGAGGTAATAGATATTGATACTTTGGCTGAATCATGCGGAAGAGCAGAAGTCTCAATTGACGAAGTACAACAAAGAGAAGGATATCTAGAAATCCGAGATGGGCACTCAAAGCCAATATCAGAGGGAGCTCTTTCACCAGATGGCTCAGTATTAGCAACAGCCAGTGAGGATGGTTACATTAAGTTTTGGCAGTTGTCTGACAAAGTAGAGTGTATGCATGAATTCCAGCCCCATGGTGGACAGCCTTTGTCCTGTATGATTTTTACGGACaatcaaacttcacaggataaAGAtCTTCCAATGTGGCGATTTTTAATTACAGGGGCTGAGTTTAACAGAGAGATTAAAGTTTGGTGTACAGTTACATGGTCATGTTTGCAAACAATCAGATTTACATCTCAAGATGTGCCAAGTTCTGGCTCTATTCATCATTCATTCCTGAAAGTGAGTTTGGACCTCTCAGCATCGTATTTGGTAATTTCAGATGTTCTCAAAAAGGTTATTTACGTACTCATGTTTCATCAAGACGTTGCCTTTGGTCAAGCACATGTTACGTCAGTAGCAGAGTTCCTACTCACACAGCCACTACTTAGTTTTGTTGTTGGCCAAGTTAAGTTGTTCAAACTTAAGTCACATGAAGAGCAAAATGGGCAGGAAAATGGAGAAAGCCACGATGAGGATGATATTCATTCATCACATGTGGGACTGGAAGAATTGGCTGCTGGAGAtgaaaagggaaagaaatttgGTGTTCAGTTACAGCTCTATTGCATTCAAACAAAAGCAATGCAAGAGCTTGTGGTGCACTTTCAGCCAGAGCCGTCTGTCCCTCCACCCACTCCGTCAACACTGTCTTCACTTGCAACTATGGGAGGTCAATCTGTTATCCATGATGCATTGTCTGACTTAAGTGGGGTAGAAACAGGAACAGAAGCAAGCACAGATGTTGAAGACCCTGATGAACAAACCGATGGTCTTCTCCCAGTCAGAACAAAACTAATAACACCAGAGGCTTTTGTGAACTCTGTATCCAGAGGCTCACCCCGCCCTGAAGCTATAAGCAGCAGTGGTGGAAGCAGTGTTACCATGGTTTCTGGACTGAATAACTCACAGGTGTCAGTTGATGAACTTCTGGGTTCATCTGTGTCATCAAGACTGTCTGATGCTACTGCAAGGTCGAGCAATTCTGCCACACCTCAGGGGTCTTTCACTCATGACAGTGGTCTTCTAACACCAACATCCTTACCCCTCCCTGCATCACCTACAGTAACCCAGGCACTTGATCCTGGTGCAATTCCTATTCCAAGTTTCCAGTCTAGTCCTCACCCAGGATCAGTTCAAAATAAGTCAAGTCCAACATCTTCAAGTTATGAGCCTTTAGTGCCTGTTACGAACACAGAGACTCAATGTGCTGCTTATGGTTTGATGAACAGAAGTGTTGAGAATGTTTCAAGTGGCTTGAAGAACACATCTCCAAATGAAAGGAGTCGATCAGGCAGTCCTGGTAGTGTAGAAAGAGATATTGAAGTATCTGTTGACGATGATAATAAAGACGAAGGAGAAGAAGAGTTGCCCGAGTCTCAAAAACCTGAGGCGGAAACACAAGAGGAAGCGAATGAGCATACTCGAAAATCCAGCTCAGGATCCAGTACAAGTGAAAGTTTGAGACCATTGTCTGCTCATACAGAAAGAAATCTTATTAATTTAGAAGATGTTGACAGGTGTAAAGATGATATCGTCCAAGCAGATGGGGAAGATATGTTTACAGAGGAAAATCTGTTAGAGCAGTGGGACATGAATGTTGATGATGAAGTAGTTCCAACTGGACGGGAAAGTCCTGAGTCAGCACATGCACTTCCTGTTGGCATGCCAATAGAATCCGGTGGAGCAAGAAAGAGACCTTCATCACTATCAAGttttgtttctaCACCTGTAAGTACCACAGATATTCCCCCACAGCAAGTCCAAGTTAGGATGGATGGTAGTATCTTGTCGTCAATTGGAGAGCTCCTGAGTTTGGTCAAATCACAGCAGCAGGATATAAGTGAACTTCGTCAGCAGCTGAACATGTATCAGGCTGATCAACAGCAGAAAATGTCAGCAGTAGTACATGAAGTGCAGATGATTGATGAGAGAGTTTCCACCAGATTGGGAAACACACTGGCTGAATTTTCCAGGGAGGAATCTCAACGTCTGGACAAAGCTCTGCGTGAGAAACACTCTGGTGACAAGAAGAAACATGAACAGCTTCAGAATACTCTGTCACAAACCCTCACCACCACCCTGTCAGGAAAATTAGACAAAGCTGTCAAGGCTGAAGTTAAGAGTGCAGTGGTTCCATCTGTACAGAAAGTATTGAACTCTCTGCAGGAGCAGCTTAACACTACATTGGCACAGAAACTCACTGCTGCAGACAGTGTTTTGAAGGACAGTATTGCTAAGATGGTGAAAAGTAAGGGAGTAGTAGATGCCATTGGTGGAGCCTCAGCAAGTGCACTGCAGGGACCCATTCAGGTGACTTACCGTGAAGCATTCCAGAGCACTATTTTGCCGTCATTTGAAAGGGCTTGCCATAACATGTTCCAACAGATAAATGATTCATTTCATAAAGGAACACAACAATACCTGCATCAGGTAACAACTGCTCTGGATAACCGTAGAAGAGAAGAGAAAGAATCTTTTGATCCTGTAATGCGACAGCTGGAAGCCCAGACACAATCATTCCAGGCTATGACAGAGAGACTGTCATCAAACATTATGGCTGACTTTGAGGTCATGTTACAAAAGCAATTGTCGTCTTCCATAGAAGGATTGCGCGAAGAGATTTTCTCACGGCTGTTGTCAGAGGTCTTAGCATCAGTCCAGGATTCAGTCCAAAAAGAAATGGGATTGGGATTAGAAGGTCTGCGTCAACAGCTGAGTGAAATGATAGCATCATCAGCAGCAGAAAGCACATCACAACAGGTCCCTGATATAGCCCGTACTCAGGTCCTAGTTTCCAGCTTGCTGAAATCTGGACAAGTGGGGCAGGCATTCCAAGAGGCCCTGACAGCAGCAGATCTAAATGTTGTGATGTATGTTTGCGAAAATGTTAACCCTGAGGAGGTCTTCTCCCAGTCACCGTGTCCTTTATCACAGCCAGTCTTACTGTCTCTAATACAACAACTGTCTGTGGATCTCACCATCAACACAGAGCTTAAGCATAAATACATAGAAGAATCTCTCATGGCTCTGGACACACATGATGAGGTCACAAGAGAACATATGCCAGTTGTTTTAGAGGGGTTATGTCAGCAGCTCCAGTTGGCTATCGAAGAAGCATCAGGTCCCATGCAACGTTCTCTAAAGATGTTACAAATGGCAGCAAGGTCGCTCCTTAGATAG

Transcript

ENSOFVT00000002961

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LUT1	Enhancer of mRNA-decapping protein 4 OS=Danio rerio OX=7955 GN=edc4 PE=3 SV=1
Q6P2E9	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens OX=9606 GN=EDC4 PE=1 SV=1
Q7ZXT3	Enhancer of mRNA-decapping protein 4 OS=Xenopus laevis OX=8355 GN=edc4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003906 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21289 all species →	EDC4_C	Enhancer of mRNA-decapping protein 4, C-terminal	Domain	Interproscan
PF16529 all species →	Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045152 all species →	Family	Enhancer of mRNA-decapping protein 4-like	Interproscan
IPR049404 all species →	Domain	Enhancer of mRNA-decapping protein 4, C-terminal	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR044938 all species →	Homologous_superfamily	Enhancer of mRNA-decapping protein 4, conserved C-terminal domain superfamily	Interproscan
IPR032401 all species →	Domain	Enhancer of mRNA-decapping protein 4, WD40 repeat region	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15598 all species →	ENHANCER OF MRNA-DECAPPING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0031087 all species →	Biological Process	deadenylation-independent decapping of nuclear-transcribed mRNA	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12616	EDC4; enhancer of mRNA-decapping protein 4	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.