Gene detail

Detailed information of ENSOFVP00000002816.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020630904.1, F-actin-uncapping protein LRRC16A-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000003121

ATGAACTTAGCTGATCTGAGCGACACTTACAGCGACACGCTGCAATATGTCCAGCCAAATCTCTTTCGGAATTATGGAGGAAAGTCGAAATTTGGGGGAATGATATCAACTGTAAAGTGTCACGAGGACAATTTGCTTGTGAAGCAAACCTTGAACGAGCCAGGGAACAAACGGGTCCTGGTGGTTGATGCTGGAGGCTCATTAAGATGCGGTATGCTTGGGGACATGCTTGCTGGACTCGTAATCAAGAACAATTGGGCAGGAGTTGTGATGTACGGTTGTATACGTGACTCGGAAGAAATTGGAAAGATGGATGTAGGTGTAAAAGCCATAGGAACAATGCCATTGAAATCTGTGAAGAAAGGACTTGGAGAAAGAGATATTACGGTGCGATTTGGAGGAGTGACATTTACGCCTGGTCACTATGTTTACTCAGATCTTGATGGTATCATTGTATCCCCTAAACATGTGCAGTTGGCTATCAGAAGGAATATAGAATTGGCTTTTGTCAAGAAAGCGAAAGTTGAATTCAAAGGTGACCGATCAGAGGCTCGAATCTTGGCTCTTTCTACCCACCGACTCTATGTCCTTATGAGCTCCAAGAATGGCTGCAAGGTGGATTTTAGCATGCATGTTTTGGAAATACAGAAAATTGAGAGTAGTAAACCTCTTCTGTTAACTCTACTATGTGGAGAAAAGTCCCATTATTTCCGGGTTCTTCAACCAAAGGATTGTACAGAGATTATTGCCCACATCATAGCTTCTCTTAAATCCAACTTTCCATCTGGAAATCCAGACCGTCTTCTCAGAGTGGTCTATGGGCCACCAGAGGAAAGTGACGCACGACAAGCACAGGTCACAACACTTGTCAATAACCTGCGGAATGCAGGAGGAGAATTAGAGACTGGGCCTTGTGGTGGATTTTCCAAAGTATATGTTTCGATGTGTGATTTTTATGGACAGCCACATTTGGAAGAAGTTGTTTGGGATATTGACACAATCTATTTATCACTCAATACAAAAGAGTTAAACATTCAAGACTTTGACCACCTGGAACACAAGGACTTGGTTCCTCTTATTTCAACACTGGAGTACAATGACTGGTTTACGAAGCTGACGTGTGACTCATTTAGACTGGGATCTGAAGTGTGTGATGCAATTGTCAGAATTATGGTTAAGTCATCCACCATAGAAGAATTAGTCCTTGATAGTGCCAGTTTTGGCAGGGAATATTGTCAGAAACTGGCTTTGGCTCTTACATCAAATCCCAAAACATCTTTGCATTCCTTGAGTTTAAATGGGAACTCCATTGAGGACAGAGGTCTAGTGCATTTGTCTGGTGTCTTCAGTAAGCTTCCTCAGGGTTTGGTGTGTCTCTCCCTTGCTGACAATGGATTTACATCCAGAGGAGCAAGCTCACTGGGTCAGGCATTAAAAAGCAACAAGTATAATGAAAGCTCCCTACACAGGTATGGTCTGTGTGATTTCTTGTCAAAGCCAAACATGCTGACCCATCTGGATCTCTCAGCAACTGAATGTCCACTTGACTTGTTATTTGGTGCTCTTATTCGAGGCTGTGCTCAGCATTTAGCATCTATCCACCTTGCTGGAAACAGTTTTACCACAAACAGTTCCCAAGCTCTTAAATTTTTAGATGTATCAGACTGCAAGTTACACGCTGATGCGATCAGagCAATCCTGGAAGGATTACGTGAAAATAGTGTTCTAACTGATGTTGAACTGAACATTAGCAACAATGAGCTCAGAAGTCAAGGAGCCAAAGCTATTGCAGAAAATATATCCAGCCTGAAGTGTGTGAGCAGACTAAATATCAGTGAAAACGGACTTGAAATGGACTTGATCAGAATACTAGAAAAGATGTCTTCAAACAAAGCATTGAAGTATTTGAACCTAGGACAGAATACGAGACAGCGGAGTTCGTCTGCAGTTATGGAAGCGTTAGTTCAGCTAATATCCGAAGAAAACTCGCCCATCGAATCCATCTCTTTAGCCGAATCCAAACTGAAACATGACATTATCCCGCTCTTAGATGCTCTCGGGACAAACGAAACGTTGAAAGAACTTGACATCAGCGGAAATCAAATGGGCGACGAAGGAGCGCGCATTCTGGCCAAGGCTCTTCAAATCAACACGAAACTCAGGACTCTAGACTGGGACAAGAACGGGACAACTTACAGAGGATTTGCAGACATCGCAGCAGCTCTGGAGTGTAACCATACGCTACTGTCCATGCCAATGCCGCTACACGATGCTGCACAGTCGCTCAAACCTCAAACAGAACAGCACCTTAGAAAGATCGAGCAGTTGTTACTCAGGAATCAATCGCCTCACAAAGTGGTTACAGAACAGGCGTACAGATTGCAACAGGGTTTGCTACTCACGTCCACACAGCAACAGATGGTGGACCGCCTGGTGGTTCAGTTACAGGACCTTGTGAGTGCGCTCCGACCCTGCAAGGACCCTGACGTAAAGAACGAGATCAAAACTGCTAAACAGTGCATACAGGATGCAGACAAGCTCAAACAGCTGCTGCTGAAGTTCCATTTGTGTACAAATGACAGTGACATTGAGGCTCGATTTGCTGAGCTTGCTAGCGACTTCTATAAAGCAGCTGAGGATAAAATGAAGagcaaCATGGACAAGATGATCGATTGCGCAAAAGAACTTTGTCCTTACATCACATCTACAGACGACGTCAAGAGCCGTCTACAAGTCGTTGTACAGGGCAAGTCAAGCATAAATGAAACATTTGTGGAGGAAGTCATACTTACTCGAGCTGCAGCTGGTATCGCCAATAGGTTAAGTGAAGACAAGCTTACAGTAGCTTCTGTTATGGCGGACACAATCATGGAGATGGTGATACATCAACTGGAGAACAGCGTCAACAAACTGGAGTTGCTTCTGAATGACTATCGAAACAAAAGGGGAGAGAAGGATTCAGAGACTGAAACGAGCGCCGTTGAAGACGACGTGGCAGCGGTGGCTAAAAAAGCTCGAAACCGCCTTAGCTCAGCCCAGCTGACGGTGCCTGTGACAGACGGAACAGATGGCCAAGGTCAAAGAAACAGCAAGAGGAGGCCTACAATCAGCAGGCGTCCGTCTCCCAGAGGGGTTCCTGAAGAAGACGAACAAGACAACAAAGAAGAGGTCACGGTCGTTAAGATGGAAAAGAAAGAGGTTGACGCGGCGCCTCCAGCTACTCTAGTTGTACCAAAAAGTGTCGACTTCACCGACATGGAGATGAAGGGCTCAGATCTGAAGCACTTGGTCAAGGGTCGTGCTCGACCCCCTCAAAAAAGGCGCCTACCCACCCGTCCCTCAAACAGACCAACTGCGGCTAAAGAAACTGCCAATGACGAGAACAAGGAAGAGGAAGATATTGAAGTATTTTGGAGCAAGACGGTAGAAGAGCCGAgcgtagtagtcacgccagagAAGAGCACAAAGAAGACGTCAACATCTAAATCACCCTCCTCGAATGTCACACCTCCAGGCAAGACCACTCCCCCTAGACCTGCACCCAAACCAAAACCCTCACCCAAACCAAAAGACAGCGAGGTAATGGGATTTAGTGATAGCTTAAGAATTAACGAAGGAACGCGTCCATTTAGATTCAGAGGCTTTTCGCCTCCAAGCGATGTAGCTCGTCCGGGTTAA

Transcript

ENSOFVT00000003121

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VZK9	F-actin-uncapping protein LRRC16A OS=Homo sapiens OX=9606 GN=CARMIL1 PE=1 SV=1
Q6EDY6	F-actin-uncapping protein LRRC16A OS=Mus musculus OX=10090 GN=Carmil1 PE=1 SV=2
Q8ND23	Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Homo sapiens OX=9606 GN=CARMIL3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003741 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF16000 all species →	CARMIL_C	CARMIL C-terminus	Family	Interproscan
PF03737 all species →	RraA-like	Aldolase/RraA	Family	Interproscan
PF17888 all species →	Carm_PH	Carmil pleckstrin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051279 all species →	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR010203 all species →	Family	Regulator of ribonuclease activity A	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR036704 all species →	Homologous_superfamily	Ribonuclease E inhibitor RraA/RraA-like superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR005493 all species →	Family	Ribonuclease E inhibitor RraA/RraA-like protein	Interproscan
IPR031943 all species →	Domain	CARMIL, C-terminal domain	Interproscan
IPR041245 all species →	Domain	CARMIL, pleckstrin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112 all species →	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0008428 all species →	Molecular Function	ribonuclease inhibitor activity	Interproscan
GO:0051252 all species →	Biological Process	regulation of RNA metabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000002816.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.