Gene detail

Detailed information of ENSOFVP00000003396.1 in Cyphastrea salae

Genomic Location: chr1:14323449...14333206
NR annotation: XP_020613404.1, uncharacterized protein LOC110051686 isoform X2 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOFVT00000003719

ATAGACCACTTGAATTTTCTGGGGAAGTAGATTCAAGGCAAGTGCAAGCAAGCTTTGCGGCTATTACCGACCGAGATGTCTGAGCGACAGAGGCTGAGACCATGGTTGGAAGACAAAATCAACAGCGGAAAAGTGCCTGGATTGAGCTGGCGAAACAAAGATCTCAAAGAGTTCCGAGTCTCTTGGAAGCACGCTGGCAAACCGGATTTTGTTGTCGAAAAGGACGCGATGCTGTTTAAGCTGTGGGCTGAACACACGGGCAAATATCGCGAAGGGGAGTCAGCCGATCCGTCCACTTGGAAAACACGGTTCCGATGCGCTCTGCACAAGATGCCAGACGTGGAAGAAGTGAGAGTGCCTCATAGCTTGGATGAGAAGGAGCCTTATCGAGTTTTCCGATTTAAGGATAAAGGTagtacaacaaaacaaacctcAAGCTTACCGAGGTCGGCGGACGAAAATCAAAATGGAAAGCGTCACTTGTACCGTCCAAAGAACGACACTGTCATTCGCGCGGCTCCGCCATCCAAAGAGAACTTCTTCTTCAATAACTACCCAGTACTGTCATCAGGGGCACAGAGTTATGGCGGCCGACAACAAGATTCTCCGCAGCACGACAGCAGCGACAGTTCTCTTGAAGACGACATCGATCTCGACAATATCACTCCGACGATTCCTCCATACCCGAGTCACGCGTATGAACCAATGTTGACAGACGAACCGACATGCGCAAATTCAGCCAGTTCTTTTCATCCTTACACCAACGGCCACGGCGGCGTCTTCAGTGGTAATTTCATGAACAATGGCTATATTCGGCAGCTTCCTCCCGCCTTCGATAATACGGACCTGAACAACGTCAGGAAAGAAATCGTTGACGCGATATTCGCGGCTAACGGGCAAATGGGGAATGGTTCGGTCTTCGGTGAAAGCGGACAAGCCTTTCTTCAGCATGTTATGGCAACTAATCCTGCCTTGATGAACATGAAACTGTGGCTGCAAGAGGTTGTTTTGCCGGACGAGGCCTCTGATGTCGCCTCCTCTGTCAGCACTCACCTAAACATGGACAACGGATTAATAGAACCAGCTGGCATGGACATGGAAGATGTCATAGGACGGCCGGTCAACATTCCTCATTTGAATGAAAATGCAGCGTCTATGTACTCGAGAAGTGGAAAACCAACTGGGGAGAATTGTGATTCCACCGCTATGCACATCCGGGTATTCTATGGCAACTGCGAAGTTTATTCCACGGACACCAGGCTGACAGAAAGCGAACGAATCATCAGGATATTCCACGGAAGCCACCTGGGGGAGTCCCGTCCGTATGAATTGGCACTGCTCAGTAAAATTTACGGACCTCCCACAGCAAGACAGATAGAGCTACCGCTGGTCAACAACTACTCCAAAGAAACCATCAAAGTCATGGATTTTTTGAAACGAGGGATTTTGTTGGAGATAAATGAGGCCCAGGATATCTTTGCTACACGATTGTGTCTTACCAGGGTTTTCTTTTCCAACGGGAGGAAGGCCGCCAAAAAGCTTGAAAGGGAAGAACGCACGAAAGTGTTTGACTACCAAGGAAAATTTCTTCCGACTCTCAGAGAAAGCCGAAATGGAAATCGAGAGTATCCTTCGTATGAAGTCACTCTCTACCTCGGAAGAGCTGATGGGAGTCTGGTATCCATTGTTATCACCCACGTGATGGCCAAGATGAGCCTGCACAACGCAAACACAGCGGGTGAGAACTTTTGGTCTGAGCCAAATCTGAACGATCAGTTAGCTACAAATCTGGAAGAGGATTGCATGTATTGAAGTGAGCACCGTAAGCATTGCTtcataaagtttaaaaaaatattttttattttgtagtaGATTAGTGTAACACGACTTTTGTACTGAAAATGAGGGAAAATATTCAGAAAAACAGGCAAAGATAAGACTTTAAAACCGAGGTAGAAGTAGTCGTTGCATCAACATGTCACTGACCTGAATGGGTCGTATTTCTCTAGGAAGACATATAACATGTCTTACTGTTTTCCCAACGAAGCAAGACGTATATTAAGTCTTCCTAGGTAAAAGAGCGGCTTACATAAGATCTGTTAGCAAGCAAAAATATCTCTACAAGCCCTATTAATTTAGCTGAAGCAAATGGATTCCGTTGAAATCAACTTGATAATGGTTTGTGTCAAACCGACGTAAAGTTTGGAATTTTataagtattttattttgtaacatCAAGAGTATGTAATTTATTATTTGTCTTAACACCTCTTGTGTTTAGCTTCCTCGAAGCTGATGTTGTTATGTCTTGCTTAAGGCGGCCAAAGTCACTACAAAGTGCTTGCGAGCAATGCTATACAGATTGCATATAGAAAGAGGATTATTTGGGTAGTATCGCGTGCAGAAACTTTGCACATGTCGAGAACTAGTAGAGGACATGCCTATCGCTAGGCAACAAAACTGGCAAAACGTTAAGGGTTTAAAGCCGATAAGAAACCACGTGAATGTTGAGGTAGCAATGGTAAGGCTTACTTTTTCCGTAGTTAATAGTCTCAATGCGATTAAGATTAATAATCTAATTGCCCTGGAAATTCTGGCGCAGATTTGTTTGCATGTTTACAGCTCCCCTGGCTTTGGCAACTATAGAGCAAGGCTCACAgaactgaaaataattttaagaaaTGTCAAATTCACTTGTAAAACACATGCCATGAACATCACGAGTCATAACACTGACTCAGATTTAAATTTTTTCGAACATTTAAAATTGTTTCTATTGATAGCTCGGTTTCTTGCATGAAATCAAACCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02556	Interferon regulatory factor 8 OS=Homo sapiens OX=9606 GN=IRF8 PE=1 SV=2
Q90871	Interferon regulatory factor 8 OS=Gallus gallus OX=9031 GN=IRF8 PE=2 SV=1
P23611	Interferon regulatory factor 8 OS=Mus musculus OX=10090 GN=Irf8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000568 (this species only) · gene tree & orthology
Transcription factor family	IRF · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00605 all species →	IRF	Interferon regulatory factor transcription factor	Domain	Interproscan
PF10401 all species →	IRF-3	Interferon-regulatory factor 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001346 all species →	Domain	Interferon regulatory factor, DNA-binding domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR017855 all species →	Homologous_superfamily	SMAD-like domain superfamily	Interproscan
IPR019471 all species →	Domain	Interferon regulatory factor-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11949 all species →	INTERFERON REGULATORY FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0002376 all species →	Biological Process	immune system process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000003396.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.