Gene detail

Detailed information of ENSOFVP00000003899.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_027037466.1, importin-4-like [Pocillopora damicornis]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000004222

ATGGCGGAGCTAGAGGAAATTCTCCAAAAACTACTCGTTCCTGACAATACAGTGATACAGCAGGCTACCGCTCAACTCCGCGAGGCGTTCAAGAACCCTGCTATTGTCCCAGCTCTTGTGACTGTGCTTGGCTCTTCTCAAAATCCTCAGGTGAGACAATATGCTGCAGTTTTGTTGCGTAGGCGAGTTGTCAAGCAGTGGACAAAACTGACCCCTGAGGTTCATGCCATGTTAAGAGAGTCCCTTTTGCAAGTCTTGCTTCAAGAACCAGATGTGATAGCTAAACATGATCTGCCAGCTAACCAGTGGCCAAAACTGCTGGTGTTCCTTCAACAGCACATCAAGTCAGATCAACCACTACAGAGAGAGATGGGCATGTTCCTCCTAAGCTCTATCACGGAATCAGCCAATGAACAGCTACGTCCTCACTTCATCTCCCTCTTCCAACTTTTCTCCAGTACATTAGAAGACCAGCAAAGTAAACTGGTACCATTTTATACTATAAGAGCATTGACATGCCTCATTGAATGTGTTGGAACAGATGAAATTccTTTAGTTAGACCTCTTATACCAAAAGTTGTGGCGTTCATCAATCAAATCTTAACCATAGATGAGGATAAAGCATGTGATGCAATGGAAATATTTGATGAACTGGTTGAGTCTGAAGTCAGTATTGTTGCTCCTCATCTAAAGGCATTGGTTGAGTTCTGTCTTCAGATAGCAAGTAATTCATCTTGTGGAGACAACTTGAGAATAAAAGCTCTTTACTTTGTAAGCTGGCTTGCAAGAATCAAACCCAAGGCACTGGTGAAGAACAAGCTTCTCTTGCCAACCTTGTCCGTCGTGTTTCCTCTTATGGCTTCACCACCAAGTGAAGATGACGATTTTGATGATGAAGACGAAGATGATGAGGTAGAAGAAGGAACAGAAGCAAGCAGACCTTGTGCGGTGGCTTCACAGGTTCTTGATATTCTTGCTCTTCATTTTCCACCCGAGTCAGTTATTCCACCTTTAATGCAGTTAGTGCAGCCAGCTCTTGGAAGTGAAGACCCATATAAGAGGAAGGCAGCATTAATAGCTCTGGCAGTGCTTGCTGAGGGATGTGCAGACTACATCAGAAACAGATACCTTCAGGCTGCGTTACAGACCATCTGTAGAGGTCTTTCAGATCAAAATCCTTTGGTTCAGAATGCTGCTCTGTTTGCACTGGGTCAGTACTCAGAGTACTTGCAGCCAGATATCAGTAAATACAGTGCCGATATACTTCCACTTCTGTTTGAAAAACTTGTGAATACTTCAGAAAGTGAACAAAAGTCATCCAGCATAACAAGGACGTATTACGCATTGGAAACGTTTTGTGAAAATCTAGGTAATactGCACAGATGAAGGAATTGGCTATAAGTGCAATAGGAGCTACAGCTAATGCTGCTAAAGAAGCCATGCTACCATACTTTCCTCAAATAGTCCAATTTATAAAGGAATATCTAAGTAACTCAGGATCTGTTGAAGGGAATATTTTACAGGTACAAGCTATAGATACGTTAGGAGTTCTTGCCAGAACTATTGGTCCTGATAACTTTATGCCACTAGCAGATGAGTGTGTCCAGCTTGGCATGAGACTCCTTGAACAGGACAGAGATCCTGATCTAAGAAGATGCACGTATGGCTTGTTTGCTTCAGTATCTACAATATTAAAGactaatatgggaaaataccTCAAAGACATAGTGAAATATATGATTGATTCACTGCAATCTACGGAAGGAATTGTGACCCACTATGCAAGTGAAGATGACCCTAGTTTTCTACTAGAAGATCAAGACTTaggagatgatgatgatgatgaagtaACTGGGTATAGTGTAGAAAATGCTTATCTGGAAGAGAAAGAAGACACTTGTAATGCTCTTGGGGAGATCTCAGAAAACGCAGGGACAGAGTTTCTACCTTACTTAGACGAATCATTTAAAGAAGTATTAAAACTCGTCCAGTTTCCCCACACAGGGGTACGGAAGGGAGCTGTGATGGCGTTAGGTCAGTTCTGCAGTGGATTCCATTCTCTTCTTCAAGAAGCTGGTGCAGAGGATAAAACAGCATTGCAACGTATGCTTGGCACAGCAATACCAACATTTATCACCGTTATAACGAAGGACAAGGACAGgtctgttgccatggcaactcTACAATCACTCAATGAAGTCCTGAAGGCAGTCAAGTCTTTAATCGTTGATGAACAGGGACACCCTGACGCCATCGCTAATGCCGCGAGAACCGTGCTCATGCAGAAGACTGCTTGTCAACaaggtgatgatgatgacataGATGATTCAGACCAGCAGGCAGAGTTTGATGCCATGTTGATTGAGTATGCCGGGGACATTCTTCCCTCCTTGGCTACTGCAGTAGGCGGACAAATCTTTGCACCATACTTTGCTGGATTCTTGCCCTTGTTACTGAAGAAAACTAGAAAATCCTGTTCAGTTTCTGATAAATCGTTTGCTATTGGAACAATCTCAGAGGTACTGCTCGCCATGGCCCACGCAATGCTTCCCTTTGTTCAGCATCTCTACCCAGTGTTTATGACGTCACTCAAAGATGAGGATGATGAAGTGAGAAGTAACGCAATCTATGGCCTTGGTCTTCTTGCTTTCTATGGTGGAGATCTTATTACACCTCATTACCAGACTATTCTAGAAGCTCTGTTTGTGATCCTGTCCCAGAACCAGCCCCCTCGCGTTGTCGACAACATCTGTGGCGCTGTCAGTAGGATGGTAATGGCCAATAGGAATTTTCTTCCCTTGGAGAAGGTTTTTCCAGGATTGTTGCAGTGTCTCCCCTTAAAAGAAGACTTTGAAGAAAACCATCCTGTTTATTCATGCATCATGGAGCTATTTAGTGATCAGCACCCACTCATCAGGCAGTATTTACCACAGCTTCTAGCAGTGTTTTCACAAGTGTTACCCTCTGGCAGTTTACAAGATGgtaTTCGTTCAGGACTCATCGGTATGATACAGAAGATTCATCAACAGTCTCCGCAAAGATTCCAGAACATTCTGGCAGAAATGCCTCAAGAGCATGCTCAGGTGCTAATGACCGCTGCTACTGCGCAGGCTCCTGGTTGA

Transcript

ENSOFVT00000004222

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TEX9	Importin-4 OS=Homo sapiens OX=9606 GN=IPO4 PE=1 SV=2
Q8VI75	Importin-4 OS=Mus musculus OX=10090 GN=Ipo4 PE=1 SV=1
O60100	Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=kap123 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003165 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13513 all species →	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF02985 all species →	HEAT	HEAT repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040122 all species →	Family	Importin beta family	Interproscan
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR000357 all species →	Repeat	HEAT repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527 all species →	IMPORTIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20221	IPO4, RANBP4; importin-4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.