Gene detail

Detailed information of ENSOFVP00000004371.1 in Cyphastrea salae

Genomic Location: chr10:17054029...17090342
NR annotation: XP_020615608.1, regulator of nonsense transcripts 2-like isoform X2 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOFVT00000004694

ATGAATGAGGAAAAAGGCAAGGCAGAATGTGGGGAAGCGGAGCAAATTTCTGGGGGCAAAAAGTGTGCGGTGCAAAATTGTACGCGCGAAGCGGTGGAAAGCACAGACAAAGTAAAGGAAGGGAAAGCCCAAAATTTTACCAGCCCGACTCGGGAAAATGAAAGTGGTGCAAGTATGGAGAAAGCCAAAAGTGTCATGGTTTGTATTTTTAAGGACGCAGGTGATGTGGAGGGTAACAAAGGGAAggaagaagaagacgaagaggAGCTACGAAAAGAAGAGGAGGAAATGAAACAATCCTTAAGAGAAGCACAAGAGTGGGTTGAACAGAAGCTTGCTATGCGAGAGAAGAATCTGGCTGCCATAGATCAGCGACCTGAAGAGTCTTATTTTAAGGGAAAGGACTCGTCAGTGAAGAAAAATTCTGCATTTATTAAGAAACTGAGGACCATTACAGAGTCTCAACGTGAATCCTTGGAGCAGGAATTTGCTGGTTTAAACCTCTCACGATATGTTCAGGAAGCAGTTGCTGCAATGGTTGATGGCTTGGTGAAATTGAAGctTGCAGATGTGAGGTGTGCGGCACATATTTGTGGCTTGATTCATCAAGTGTATGCTGACTTCAATGAACCTCTAAAAAAGGGACTCCTGAAAATGTTTGATGGCTATGGTGGGAAAGAAGAGGAGAAGCTGGCAAATGTGAGTAAATATCGTGTCACCCTGAGACTGTTAGGAGAGCTGATCATTGGAGGAGTCTTTCCAAAACTACCTGAAGGAATTAAAATACTTAGCACCATCTTGAGTAACATTGTCAATTGTGACAAGGAAAGCCATGTATATGTGCAGGTCATCAGCAGCTTTGCTCGTCACTGTGGCGAGGACTTCGCTGGTATAACATCTCGGAAGCAAAGGTTGATGGCGGAAAAACACAAGATTGTCTTTCCAAAGTGTGCTGTAGTTCCTGCTGAAGATCAAGCTGCAATTCAACAACTGTTATTGACTTACTACAAGTCATTGGCCAGCCATTTACTCAAAGCACACAAGGACCTACAAAACAGAGAAAAGCAAAACAGGCAAACTTTAATGACCAAAGGTGAACTGCATCCAGAAAGAAAGGAAGCATTTGAGAAATCACAGAAAGCTTATGAGAAGCTGCTGGCCAACACATCTTCTTTAGCAGATATACTTGATGTAGATATGCCTGATTTGCCACAAGATGAGTTTGTACAGCAAGAGGCTGGAGGCAGCACAATTGATGTTTTTAACCCCTTTAGACATTCAGAGTATGATGGAAGTTCTGGTCTGTGGGAAGACGAAGAAACAAGGATCTTTTATGAAAATCTAAGAGATCTAAAGTCGTTTCTACCAGGGATCTTGTACAAAGATGAAGGAAAAGAGAAGGATGATGAGGCTACTAATTCTGTTGAGGATGAAAAATTGGACACCTATGACATGGAAATAGCAGAGGAAGAATTTGAAGAGGTGGATGATGACATTATTGATGAAGAATTAAATGAAAAGGAAAGTGAAGAAGAAGATGACGAAAGTTCCTCTGGTGAAACATCCAGCTCATCCATTGGCCAGGCTCTTGAGGCAATCTTACTAAGACTGCCTACATGTGTCAACAAGGAGTTCATTGATGAGGTCGCAACGGAGTTTATGCAGACATGCAACACCAAGGGAAACAGAAAGAAACTCTGCCGAGCTCTATTTGGTGTTCCAAGGATAAGGTTGGATTTATTGCCAATGTATGCTCGTCTGGTGGCCACTCTTGATCCATGTGCTCCTGATATTGCTCCTGATCTCATGCAGCAGCTGAAAGGAGAATTCAGATTCCGTGTGCGCAAGAAGGATCAGATCAATCTTGAATCAAAGATAAAGACAGTGCGATTCATAGGTGAATTGACAAAGTTCAATATGTTTCCAAAAGGTGAAACGCTACACTGTTTGAAGatGCTTCTAGAAGATTTCACGCACCACAACATTGAGATGGCCTGTAATTTATTGGAAGTGTGTGGCAGATTTCTGTACCGCTCAGAAGACTCACATATCAGGACAAAAAACTTGTTGGAACTCATGATGCGAAAGAAAGCTGTTCAGAATTTAGACAGTCGGCAATTGACTCTTATTGAGAATGCATTCTTCTACTGTAATCCACCAGAGAAACAGAAGGTTTCCCAGAAGGAGCGCCCTCCAATGCACGAGTACATTCGTAAATTGTTGTATAAAGACCTATCTAAGACCACAACAGAGAAGGTTCTACGACAAATACGAAAACTGCCTTGGAATGAACCACAGactgcCTTGTATGTGATTAAGTGTCTGATTCGCGTATGGAACATCAAGTACAACAGTATTCACTGTGCTGCCAATCTACTGGCAGGCATAGTGCAGTATTATGAAGATGTTGGTCTGTATGTTGTTGATGGAGTTTTGGAAGAGATTCGCCTTGGAATGGAGACAAACCTACAGAAGATGAATCAGCGTCGTGTGAGCTGTGTGAAGTTCTTAGGTGAACTGTATACCTACCGACAAGTCGAATCACGTGTCATATTCAGCACTCTGTACTCCTTTATCACCTTTGGTAACAACCAGGAAGGCGTAGTATCAGTACTAGACCCTCCTGAACACTTGTTTCGTATCCGTCTGATCTGTACATTACTGGATACCTGTGGCCAGTACTTTGATCATGGCAACTACAAGAAGAAACTCGACTGCTTTCTTGTCTACTTCCAGTGTTACATCTTGAAGAAGAAAGCTGATCCAATATGGAACGAGGGACACCCGTTTCCACGCGATGTTGATTACATGGTGGCTGACACTCTTGAATCGCTTCGTCCTAAACTTACCATGTATTCAAGCTTGGAGCAGGCTGTTGAAAGCCTACAGAAGTTAAACAAGGAGCATCAAGAACAAATAGAGAAAGCTGCTCCTGTTGATCAGGACACGCACAGTCCAGGCAGTACTTCAACTCAGCCGTTGCCATCTCCAAACATTTCTTACGGTAAAGTTCTCCCAGAATCTCCAGCTGTTTCACTCAGTAATTCTCCTTGCCAATCTCCCATGCTGCGCGAGGAAGATGAACATAGCGAGACTGGGGAGAGTGAGGGTGAGGATGAAGACGATGTTCCTGAACCCCAGTGGACGGAATCTGATAGAGAAGTTACCGAAGTTGATATCAATGATGTAGATATGAACAAGGTAAAAGTTCTCAGCCCCCCTAAGCCAGAACCCACTGTGGAAGACAGAGCATTCCTTGCCGCCTTTGACAAACTTTTGGTGGATGATGTACAGACTCGCCGCGAAGAAAACCCAAAGGTTCCGAGCTTGGATGTCGCAGTTCCAATGCACCTTAAGGGACAAAGGGCTCGTCACAGTAGTCTAAGTGAAGAAAGCGAAAACCTGAACTTTGTTGTCATGCTGAAGAAAGGAAATAAACAACAGTTAAAAGATCTCCAGATTCCTCTCAGCTCTGGACTGGCAGCTAACATCCGGGACAGACAAATGGCTGAGCAACAAGAGCAGGAAGAAGTCAAAAGACTGGTGTTGGATTACAATCAGAGGCAGGAGGAAGAGATTTACAATGAGATGCTAGCGCAGCAGAGACAAGCAGGCTCGGACCAGTCCTCAAGGTCTCACGGCCACCGTTTTAACAGGAGACGACTTCCAGAAGGCAATGACACTACCATGGTGTTTGCTAACTTAACGAGGTGA

Transcript

ENSOFVT00000004694

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AT37	Regulator of nonsense transcripts 2 OS=Mus musculus OX=10090 GN=Upf2 PE=1 SV=1
Q9HAU5	Regulator of nonsense transcripts 2 OS=Homo sapiens OX=9606 GN=UPF2 PE=1 SV=1
F4IUX6	Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana OX=3702 GN=UPF2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003459 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854 all species →	MIF4G	MIF4G domain	Repeat	Interproscan
PF04050 all species →	Upf2	Up-frameshift suppressor 2	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003890 all species →	Domain	MIF4G-like, type 3	Interproscan
IPR039762 all species →	Family	Nonsense-mediated mRNA decay protein Nmd2/UPF2	Interproscan
IPR007193 all species →	Domain	Up-frameshift suppressor 2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12839 all species →	NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005844 all species →	Cellular Component	obsolete polysome	Interproscan
GO:0035145 all species →	Cellular Component	exon-exon junction complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14327	UPF2, RENT2; regulator of nonsense transcripts 2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.