Gene detail

Detailed information of ENSOFVP00000004627.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020610205.1, tRNA (cytosine(34)-C(5))-methyltransferase-like, partial [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000004950

ATGGGTAAAAGGAAGCGAAGGGAGAGATCCAGACCAGCAAAGAGGTCAGGAGCTAAATCACCAATGCAGTGGGTAGAATTTGTAAGAAAAAATGATTTGTTTGAGCAATATTACAAGATTCAGCAAATAGTTTCTGAAGAAGAGTTTCCTTCATTTATTGAAGCAATACAGACAGAACTTCCAAGCACATTTCGTATTACAGGAACAAGAAGTCATGCTCAAGAACTGTTACATGCTATCAGGAAATTTTTTCTTGACGATCTACAGAGTGTGCAGGTTGATGGAGGAAAGGTTGATCCCCCAAGACCCATCACATGGTATCCTGATGAGTTAGCTTGGCAAATTAATGCAACTAAGAAATTTATCAGAAAGTCTTCATGTATGGACAAGTTTCACAATTTTCTAGTTCAGGAAACAGAAACGGGAAACATCAGTCGTCAAGAGGCCGTCAGTATGATTCCTCCTTTACTTCTAGATGTCAAACCAGGTCATAAGATACTGGATGCATGTGCTGCTCCTGGTTCCAAAACTGTTCAACTTATTGAACTTCTTCATGGCGAGGAGTCATCAGGAATACCtgatGGGCTTGTAGTAGCCAATGAACTTCAGAACAGAAGATGTTATATGCTAGTCCATCAAAGCAAAAGGCTTCACAGTCCTTGTTGTTTGATTACAAACCATGATGCTGCTCTCTTCCCTGCCATGTTTTTAAAAGGAGAAGATGATATGAAGATTCCTTTAATATTTGACAGAATCCTCTGTGATGTCCCATGTAGTGGAGATGGTACCCTTAGAAAGAATCCAATGATTTGGAGGAAGTGGAATCCACAGCTTGGCTTAAGTCTGTTCAGGATCCAGTTGCGTATTTTAGCACGTGCAGTGGAAATGTTAGCCACTGGAGGTCGCATAGTCTATTCCACTTGTACTCTCAATCCAGTAGAAGATGAGGCAGTTATTTGTACCTTACTTCAGAAAGCTGAAGGTGCAGTAGAACTTGTTGATATCTCATCACATCTTCCAAACTTGAAGAGATCCCCAGGCTTAAAGACTTGGAAGGTAATGACaagagatatgaaaattgttGATAACTGTGATCCTGGGACTGACTACTTTTcaaaaaacttcaaaccagaAATGCTGGCTCCACCAGAAGAGGTTGTGAACAGATTGCATGTAGAAAGATGCATGAGAGTATATCCCCATCAGCAGGATACTGGTGGATTTTTTATTGCTGTTCTTGAAAAGAAGTGTCCAGCACCCTGGGAAAATGGGAAAAGATGCAGTGATAACCCAAGACTCTTGCCATGGGAAAGTGTTTCAGACTTTCAGCGAAGAAAGGTAGACAAGTCTGAAAAACAAGACACAGAGCCGTGCTTGATGACAGGAGGTGACAATACTGAAATGGATCATAATCAGAGCAAATtagaacaagaaaacaaagcagTTGATACAGCTGCTCCAGAAGAGGGCACCAGCAATCCAGTGATCACAAGCAGTGTACATGTGGATGATGATGAGTCTGATGGACCAGATACAGTGTACGGCAATGAGCATactgatgaagatgatgaagcCACCAAGTTCAATACAGGTCAACAGCAGAGTGGGTCATCACCAACTCAGAGTGCAGAGGATAAAAACACCATTGGAGATAATACAGACGAACCAGTGCAGCTGGTTAACATTCAACCTCCAAGAAAAAAAGCTAAAGTAGATATGAAAGGTTTTAAAGAGGATCCATTTGTTTTTCTTAAGGATGATGATGAACATTGGCCTGAAATAAAGAAATTCTATGGAATTGATGACAGTTTTCCTGCTGATCAACTTCTGGTGAGATCTGTTGGTGGAAAGAAAAGGAACATCTATCTTGTGTCAAAAACAGTTAAAGATGTCATGGAATTGATTGATGACAATCATAAGGTTATAAACACTGGAATGAAGGTCATTGCACGTGCAGAGGCTGACAATGTGGGATGCAATTTCAGGCTGATGCAGGAGGGTATTGAAGCAATGCTTCCCTTCATAAGCAAGCGTAAAGTGATTGTTACTCAGAAGGATGCTGTGATCCTGTTGACCAGGGACAGGCCTTTTTGTAATGAATTTTCAACTGGAACTCAGGAACAGTTGAATAGTATTGAAGAACAAGGatgtattgtgtacatgtatgaacCTAATGGACCATACAGTAATCCAGAAGATACTATTGGTTGTAGAATTGTATTCTGTGGCTGGAAAGCTAAAGTATCAACTCGAGTACAGATCAGTAAGTTTGACAAGACACACTATCAAGTTCTGTGTGGCATACCACCTGCAGAAAAAGACAAAGGGAAAAAAAGACATCCGGAACCAGGAAAAGAATCAGAGTGTAGAGAAGATAATGAGGTGGTTGAAACAGATGACGACCAACAACAAACAGGTTTTGTTGGTGATATTTTGGAGGTGGAAGCTCCTCAAGGGTCACTTGATGTTGGATTCATCTGA

Transcript

ENSOFVT00000004950

CATCACGTGTGTGAAGACAGTCTCGTTGCTGTTTGTGTGTCGTTTGTGTGTGGATTTTGGTATCAGTCGATATGGGTAAAAGGAAGCGAAGGGAGAGATCCAGACCAGCAAAGAGGTCAGGAGCTAAATCACCAATGCAGTGGGTAGAATTTGTAAGAAAAAATGATTTGTTTGAGCAATATTACAAGATTCAGCAAATAGTTTCTGAAGAAGAGTTTCCTTCATTTATTGAAGCAATACAGACAGAACTTCCAAGCACATTTCGTATTACAGGAACAAGAAGTCATGCTCAAGAACTGTTACATGCTATCAGGAAATTTTTTCTTGACGATCTACAGAGTGTGCAGGTTGATGGAGGAAAGGTTGATCCCCCAAGACCCATCACATGGTATCCTGATGAGTTAGCTTGGCAAATTAATGCAACTAAGAAATTTATCAGAAAGTCTTCATGTATGGACAAGTTTCACAATTTTCTAGTTCAGGAAACAGAAACGGGAAACATCAGTCGTCAAGAGGCCGTCAGTATGATTCCTCCTTTACTTCTAGATGTCAAACCAGGTCATAAGATACTGGATGCATGTGCTGCTCCTGGTTCCAAAACTGTTCAACTTATTGAACTTCTTCATGGCGAGGAGTCATCAGGAATACCtgatGGGCTTGTAGTAGCCAATGAACTTCAGAACAGAAGATGTTATATGCTAGTCCATCAAAGCAAAAGGCTTCACAGTCCTTGTTGTTTGATTACAAACCATGATGCTGCTCTCTTCCCTGCCATGTTTTTAAAAGGAGAAGATGATATGAAGATTCCTTTAATATTTGACAGAATCCTCTGTGATGTCCCATGTAGTGGAGATGGTACCCTTAGAAAGAATCCAATGATTTGGAGGAAGTGGAATCCACAGCTTGGCTTAAGTCTGTTCAGGATCCAGTTGCGTATTTTAGCACGTGCAGTGGAAATGTTAGCCACTGGAGGTCGCATAGTCTATTCCACTTGTACTCTCAATCCAGTAGAAGATGAGGCAGTTATTTGTACCTTACTTCAGAAAGCTGAAGGTGCAGTAGAACTTGTTGATATCTCATCACATCTTCCAAACTTGAAGAGATCCCCAGGCTTAAAGACTTGGAAGGTAATGACaagagatatgaaaattgttGATAACTGTGATCCTGGGACTGACTACTTTTcaaaaaacttcaaaccagaAATGCTGGCTCCACCAGAAGAGGTTGTGAACAGATTGCATGTAGAAAGATGCATGAGAGTATATCCCCATCAGCAGGATACTGGTGGATTTTTTATTGCTGTTCTTGAAAAGAAGTGTCCAGCACCCTGGGAAAATGGGAAAAGATGCAGTGATAACCCAAGACTCTTGCCATGGGAAAGTGTTTCAGACTTTCAGCGAAGAAAGGTAGACAAGTCTGAAAAACAAGACACAGAGCCGTGCTTGATGACAGGAGGTGACAATACTGAAATGGATCATAATCAGAGCAAATtagaacaagaaaacaaagcagTTGATACAGCTGCTCCAGAAGAGGGCACCAGCAATCCAGTGATCACAAGCAGTGTACATGTGGATGATGATGAGTCTGATGGACCAGATACAGTGTACGGCAATGAGCATactgatgaagatgatgaagcCACCAAGTTCAATACAGGTCAACAGCAGAGTGGGTCATCACCAACTCAGAGTGCAGAGGATAAAAACACCATTGGAGATAATACAGACGAACCAGTGCAGCTGGTTAACATTCAACCTCCAAGAAAAAAAGCTAAAGTAGATATGAAAGGTTTTAAAGAGGATCCATTTGTTTTTCTTAAGGATGATGATGAACATTGGCCTGAAATAAAGAAATTCTATGGAATTGATGACAGTTTTCCTGCTGATCAACTTCTGGTGAGATCTGTTGGTGGAAAGAAAAGGAACATCTATCTTGTGTCAAAAACAGTTAAAGATGTCATGGAATTGATTGATGACAATCATAAGGTTATAAACACTGGAATGAAGGTCATTGCACGTGCAGAGGCTGACAATGTGGGATGCAATTTCAGGCTGATGCAGGAGGGTATTGAAGCAATGCTTCCCTTCATAAGCAAGCGTAAAGTGATTGTTACTCAGAAGGATGCTGTGATCCTGTTGACCAGGGACAGGCCTTTTTGTAATGAATTTTCAACTGGAACTCAGGAACAGTTGAATAGTATTGAAGAACAAGGatgtattgtgtacatgtatgaacCTAATGGACCATACAGTAATCCAGAAGATACTATTGGTTGTAGAATTGTATTCTGTGGCTGGAAAGCTAAAGTATCAACTCGAGTACAGATCAGTAAGTTTGACAAGACACACTATCAAGTTCTGTGTGGCATACCACCTGCAGAAAAAGACAAAGGGAAAAAAAGACATCCGGAACCAGGAAAAGAATCAGAGTGTAGAGAAGATAATGAGGTGGTTGAAACAGATGACGACCAACAACAAACAGGTTTTGTTGGTGATATTTTGGAGGTGGAAGCTCCTCAAGGGTCACTTGATGTTGGATTCATCTGAACACACGCCATTTTTGATCACAGTATCATTGCATGGAATTCAACAAAATGATCACACTTCAACTCCGTAGACAATGGTGTTGCAATTTTGTCAATACTGTAATAATTTTTGACATGCTTGTTACTGACTTGGTAATTTTGTATTTGATATATTTGTCCATGTTTTAATCTGCTGGTACCGAGGCAAAGACTTTCAATATTGCTGATTCTTGTGCGAGTTACATATTAGAACCTATTAAATGGCCGAGTGCTCCTGATCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1HFZ0	RNA cytosine C(5)-methyltransferase NSUN2 OS=Mus musculus OX=10090 GN=Nsun2 PE=1 SV=2
Q08J23	RNA cytosine C(5)-methyltransferase NSUN2 OS=Homo sapiens OX=9606 GN=NSUN2 PE=1 SV=2
Q5ZLV4	RNA cytosine-C(5)-methyltransferase NSUN2 OS=Gallus gallus OX=9031 GN=NSUN2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003701 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01189 all species →	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023267 all species →	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR049560 all species →	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan
IPR018314 all species →	Conserved_site	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	Interproscan
IPR001678 all species →	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Interproscan
IPR023270 all species →	Family	tRNA (C5-cytosine) methyltransferase, NCL1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22808 all species →	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0016428 all species →	Molecular Function	tRNA (cytidine-5-)-methyltransferase activity	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15335	NSUN2, TRM4; tRNA (cytosine34-C5)-methyltransferase	EC:2.1.1.203	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.