Genomic Location: chr10:31809923...31828664
NR annotation: XP_020606459.1, potassium voltage-gated channel protein Shal-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families
| CDS |
| ENSOFVT00000005276 |
| Transcript |
| ENSOFVT00000005276 |
| Protein |
| ENSOFVP00000004953.1 |
| UniProt accession | Description |
|---|---|
| P17971 | Potassium voltage-gated channel protein Shal OS=Drosophila melanogaster OX=7227 GN=Shal PE=1 SV=2 |
| Q03719 | A-type voltage-gated potassium channel KCND1 OS=Mus musculus OX=10090 GN=Kcnd1 PE=1 SV=1 |
| Q52PG9 | A-type voltage-gated potassium channel KCND1 OS=Bos taurus OX=9913 GN=KCND1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000381 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02214 all species → | BTB_2 | BTB/POZ domain | Domain | Interproscan |
| PF00520 all species → | Ion_trans | Ion transport protein | Family | Interproscan |
| PF11879 all species → | DUF3399 | Domain of unknown function (DUF3399) | Family | Interproscan |
| PF11601 all species → | Shal-type | Shal-type voltage-gated potassium channels, N-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011333 all species → | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| IPR000210 all species → | Domain | BTB/POZ domain | Interproscan |
| IPR027359 all species → | Homologous_superfamily | Voltage-dependent channel domain superfamily | Interproscan |
| IPR003131 all species → | Domain | Potassium channel tetramerisation-type BTB domain | Interproscan |
| IPR005821 all species → | Domain | Ion transport domain | Interproscan |
| IPR003975 all species → | Family | Potassium channel, voltage dependent, Kv4 | Interproscan |
| IPR003968 all species → | Family | Potassium channel, voltage dependent, Kv | Interproscan |
| IPR024587 all species → | Domain | Potassium channel, voltage dependent, Kv4, C-terminal | Interproscan |
| IPR021645 all species → | Domain | Shal-type voltage-gated potassium channels, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11537 all species → | VOLTAGE-GATED POTASSIUM CHANNEL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005249 all species → | Molecular Function | voltage-gated potassium channel activity | Interproscan |
| GO:0008076 all species → | Cellular Component | voltage-gated potassium channel complex | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0071805 all species → | Biological Process | potassium ion transmembrane transport | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0051260 all species → | Biological Process | protein homooligomerization | Interproscan |
| GO:0005216 all species → | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 all species → | Biological Process | monoatomic ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0006813 all species → | Biological Process | potassium ion transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04892 | KCND2, KV4.2; potassium voltage-gated channel Shal-related subfamily D member 2 | - | Ion channels | ko04040 | deepkoala |
Genes whose expression across the transcriptome samples of Cyphastrea salae tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cyphastrea salae, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
