Gene detail

Detailed information of ENSOFVP00000004979.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020622073.1, nucleolar protein 9-like isoform X1 [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000005302

TTAGCACGGACAGAAAAATCCAGGCAATCATCTTCCTTCGTTAAAGTAGCATCTGCGCTCGATGAGCAAACCTTTGGCTACTTCAAGAGGGTGGAAGATGTGATAAACGAGGACGATTTTGACGACGAAGAAAGTCGAAAGCTCTTCGTCGAAAACGTGTTTACACAGGTGGAAAACAACGAAATGAAGCTTTTCTGTGATTTGATTGTAAGCAGAACTATGGAAAAGCTTATTGTTTATTTAAGTGATGTTCAGATCCGCAAAGTGATGCAGAATGTAGAAGAGCATTTCTGCAAAATCGCCATGGATAAATTCGGCAGTCACGTGTTGCAATCTTTGGTTTGTATCATTCCAAAGGCAGTAAGATCGGCACGTAGTAAAGTCAGGGAAATTGATCACGAATTTGCAAACTTAAAAAGTGCAGAGGAGCTCTTTTTGAGCCTATGCGACTGTCTTAAAGAGAATTTATCAGAACTTGTCAACCATATTTATGGGAGCCATGTTGTAAGGACAGCAATCGAGGTGCTGGGTGGCGTGAAAGTTGCAGACAATGTTGTTCGTAGTCGAGCTTCTCGGCATAGTAGAGAAAGAAGTAATCAGTCTGATGAGAAAAAGCAATTCATCAAGTTAAGCCAAGtgGGAAATGCTTTTGGAGCAAATACCATCAAACCCATGGAGACAGTTGCAGTTCCAGAGAGTTTTCCACCAATTCTGAAAAAGCTCACCAAGATCGTAATGAAAATGGAGCTACAAAAGTTATCTCTACATCCAGTCAGTAACCCTCTCTTGCAGACGCTCTTGTTGGTTTTGCACAAGAAGGATCAGTCTTTATGTATGAAGTTGTGCAAGGCAGTCATGTCGCAAATTGACATGTTCAGTAGTACGAGAGGAAAGATCAAAGGATCAAAGGAATCAGAAGAATTAGCTGATGTTGATGAAGTTgtaaaagaacaagaaactTTAAGCAGTCACCttatagaaaaaattctgcatGTTGTTACACCAGAGCTTTGGCAGGAGATCTACAACTCTTACTTCAGGGACCACTTGGTTCACTTGTCCAGTCATCCTATTGCTAACTTTATTGTACAGCATCTGATGGCAAGCACTAGAGAGAAATCACAGGCAGAACAAATGATCACTGAGGTGCTGCCATATTTAGAGGATCTCCTTGCACTGGGACATATGGGTGTTGTAGTGAGAATGGCAGAAGTTGCAGTCCGGTTTGATATAAAGCAGAAAAAGATGTTAAAAGCTTTGTTACAAGCATTCCACTGTGAAGGAAAAGTTGAACGATCCAGTGCTGTTGTTCTGATATCCTCATTAACGACATATGACATTTTCTTTGGAACAAAGTCAGAGccagatgaaaaagaaaaagatagtGAAGAAAGCATCAGAACAGAAAAGAGTATTAAAcagaagctacatgaagCATCCCCACCTGCTGCAAAACTTAAATCCATTAACTTCCATGGAGCCCTCTTGTTAAAGACACTGTTTGACTTTGAAGACCCTAGCAAGTTGGTCAAGAGCTTACTCACTCTTTCATTGGAAGAACTTGTGACCCTTGCCAATGACCCAATGGGTTCATATGCTATTGAAGCTTTCTTGAAGAGCAGATCGGTGCCATCAGAGAAGAAACACATGCTTATTGAGAATTTAAAGGGGACCTTTGCAAAACTTGCATGTGAGAAACAAGGTAGTCATGTTGTGGAAACTTGTTGGAGACAGGCAGAAGTCAAATACAAGGAAAACATTACACAGGAATTGGTTCTCAGTGAGCAACAACTAACCAGCAACTTTTATGGCAGAATTGTGTCGAAAAATTGCGGCGTCGAGCATTTTAAAAGAAAGGACAAGACATGGcatgaaaaggaaaagaaagcaGCCAGGAAAAGAAAGCTACTTGAGGAGATTTTAGAAGAGAGAGAAGACAGTGCAAAACAGAACAAGAAAGCTAAGCTAAGGGATGAACGCAAGTTTACAAAGCTTGCTCCTGAAATGGCCGCGCTGGGTTTCACTGCAAGCGGAAAACATGCTGCTGATTCTGAAGGGGTAAGGACTGCTCAAGCGAAAAAGATCTTTGATATGCCCTTTACTGAAGTAATTCTCTTTCTCTGGTGA

Transcript

ENSOFVT00000005302

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2UKV0	Nucleolar protein 9 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=nop9 PE=3 SV=1
B8N3R8	Nucleolar protein 9 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=nop9 PE=3 SV=1
A1CKL4	Nucleolar protein 9 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=nop9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00806 all species →	PUF	Pumilio-family RNA binding repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001313 all species →	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040000 all species →	Family	Nucleolar protein 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13102 all species →	NUCLEOLAR PROTEIN 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0000447 all species →	Biological Process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000472 all species →	Biological Process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000480 all species →	Biological Process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14790	NOP9; nucleolar protein 9	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.