Gene detail

Detailed information of ENSOFVP00000005143.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020603829.1, endoribonuclease Dicer homolog 3a-like isoform X3 [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000005466

ATGGAAATGGAAAGACAAGGTGTTCCCTTCACGACGCAGAAAATACCAAAGGGTGTCGATTCCCTAGAAATCAGTAAACTGTTGGAAAATAATCTGCACTTTGGTCTTCCACCATCATTTGGAGCTGATATGAGGTCCAAACAAGGCATCGCAGTATCAATTCCTCGGAGATGGTCCTCCGAATGTATTGACAAGTATTCGTCAAGTCCTCCAGCGTCACACCTCCAGAACACTGTTTCCTTGAAACCGAAAGGACAAAACGGCATTCGTTGGACATCAGGAAGGAGCCATAGTGAAGGCGAAGCAAACCCCTGTCTAAACGGCTGGAGTCCCCTTATACCTTATGCCTCAGACGAACCAAAACGCGAAGATCTTAAATCAAAGATTCTTGATGTGCTGACCTTGTATGGAGCTATGGAACCCACAGAAATCATGAACGTTGTTGGACGTGGGACAAGGGAGGAAGTGAGCCAGTCTCTATGCTCGCTTGGTAGACAAGGTCTTGTTAATTTTACAGTTGCGAGTAATCCTTCCCTTACCGTATTGACCTCAACTGGGCAACCTGTTCGTGAGAAACGAACAAACCCTGGCGTTATTGGTGGAGAAAGGAGCAATAACCAGTCTTTGGCAAGAAGtggttatgaagagttctgTCCGCAGCTACCAAGGAATTCATCTTGGGGATCTTTTGATAACAGGCCAAGAAAAGAACCTCGGACAGTTGATGGCATGAAGCCATGGATGCGTTCAAATGGTAATGGTCTTTCACCAGGTGAAAGAAGTGCGTGGAATTATTGCAAATTGTGTCGCGTTTCACTAATGTCGGAGGCGCAGTACGAAGAGCACCTTCGGACCaccaaacatcaaaacaaagtgGCAAAGTTCAACGCGATACCATACAAGAAATACTGCGAGTGTTGCAAAGTGCATCTAAATTCCGAATCGCAAGCCAAGGAGCACTTTAGCAGTGGTAGACACGAACAAACTGTTGCGAAATCTCAAAAGGCACCACCACAGCAACATCTGCCATTGATCACAGTTCCTGAGGAATTTCTTCCGCAGCGGAGCACAAGAACACAGCCATACGACTACCAAATAGAGCTATACTGCAAAGCGATGAAGGCAAATGGCGTGTGTTTCCTTCCAACTGGAACTGGTAAGACACTGGTGGCTTCTCTGGTTATTGGGCACATGCTTGCGTTGAATCCATCTCGGCAGGTAGTGTTCCTTGTTGATCGCGTCCTCCTTGTTCTGCAACAAAGGGACTACCTTAGGAAGGAACTGGCGCATGTTCGAGTCGCAGATGAGCGAGGTCCTTTTAAAGGAACCAGACCCATTCGCATCGGAGCGGTGTGTGGTGAAATGAGGAAGCTTGAGGGGAATGCTCGCATCTACGAACAGGATGTTTTGATCATAACAGCCGACTGCTATCGGAATCATCTGAATAATGGAACACTTCGCTTTGATGACGTCTCATTGATAGTTCTAGACGAAGCACATCACTGTAATAAGGACCATCCTTACAATGTCATCATACGAGACTTTTATCTTCGTGAAGATGTTCTACTAGGTCACAGACCCAAAATACTGGGACTCACAGCCTCCCCGGCTGGGGAAATCTCTCTGGACAAAACATCCAAGAGATTGCAGAGGCTCTTGGGAAACCTGGGCGAAGCACAGCTTTTGATCGTGACAAATAATGTACAAGAATTGGAAGAGAAGACAAACAGGGCGCCGCCTGACTGCATCTCAGCTTCATACACAAATTGTGAATGCGAACTCATGGACGTTCTCGTGGAATACGTTACCAAAGCATTCAACATGGCAGTGCGACAGAGTGAGATGAAAGACTACAAAGACATCTTTCAGCCGTCTTCCGGCGGCCATTTTAGCATCGATGACATCTACCCTGTTCTTGGTGTCATAGATAACATTCTACTTTCCCAGCCCGAATCTAACGCTTTGCATTCGCTGATGCACTTTCAGCTGATATGTGAAGTTGTGTGCACCCTTCAAGAGTGCGGAGAGCAGATAGCGATTTATCAGATGGCCGAGCTGGCGGACGAGAAGTGTCCTCATGGCTTTTACTGGGCAGAGAGTGAGGGTCTTCCCTGCGCTAAAGTCATGTCATATTTGGAACACTATCTATGGCAAGGTAAGTTTCATGGGTCAAATTCAGGAATAGAACAACTGATGAAGCAGTTATTGAAAATGAACTGGACTGGGTCGAGCAGCAGCGTCAATTCTTTTGTCTTGGTTCTGGTCAAACGGGCTCGCACGGCCCGATACCTGGCTAGCTATCTGTCAAACTGCGGGTTGTTACGGGGCGTGAAGACGACATCTTTTGCAGGACACGGAGGTGGATCTGCTGATAACGGACTGACTTACCCACTGCAAAGAGATATTTACCTACAAATTCTTGAAGGAACGTTTCAAGTTGTGGTTACCACAAGCGTAGCTGAGGAGGGCTTTGACCTGCCAGTGCCTGACTTAGTGATTCAAATGGATCCCTCAAGCTCGGTTTCAGCTCTCGTGCAAATACGCGGCAGAGCACCTCTGAACGAAGCCAGGTTTGTTGCCATCTGTAGGAATGACGAACAAGCCAAGAAAATCGAAGATTTATTGAAACGTGAAGAGAACATGAGACGCTCTGCGAGGCTTATAAACGGATTATAA

Transcript

ENSOFVT00000005466

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4RKC3	Dicer-like protein 1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 PE=3 SV=2
Q1DKI1	Dicer-like protein 1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DCL1 PE=3 SV=3
Q7S8J7	Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005652 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000005143.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.