Gene detail

Detailed information of ENSOFVP00000005696.1 in Cyphastrea salae

Genomic Location: chr11:26137882...26158593
NR annotation: RMX43042.1, hypothetical protein pdam_00001829 [Pocillopora damicornis]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOFVT00000006120

ATGGTGGATTTATCTGCTTGTCGCCGACTGGTAAAAAGACAAATTTTTCGAAGAAATGAGagttttttgctgcttgttgTAATAGTTGCGTTTTTGATTATACTTTTTATGTACCAGAAAGTCGGCTGTGATGTCAAAGAGGAATCATTTCGTCAATTTGACATCAAAAGAAATGAGCAGTCAATATCGACCTTTCTCTTCATTGTGATTTTAACTTCGCCAAATGGCAAAGACAGAAGAACTGCCATACGGGAAACGTGGCTGTCGAAGCTGTCTAATGGAGATACTCTTGATCGTCCAGTAGTTGCAAAATTTATAATTGGAGTGAAGGAATTGACTCCAGAACACATGAAAAACTTGGAAGATGAGAACAAACTCCATCGTGACATTCTGTTTCTTCCAGAACTCAAAGATGCCTATAAAGAGCTTCCTAGTAAGGTATTGCAAACATACAAGTGGATTGATCAAAATGTGAATTCCTCATACATTCTGAAAGTGGATGATGACAGCTTTGTTCGGCTTGATCTTATCATCTCTGAACTCAAAAGCACTTATTCCGCAAGGAGATTATACTGGGGTTTCTTTCGTGGGGATGCACATGTCAAATTCGCTGGACCATGGGCTGAAAAAAACTGGCATCTTTGTGATAGGTACTTACCGTATGCTCAAGGTGGTGGCTATATACTATCCACTGATTTGGTCAATTTTATCGCAAGAAATGCTGATCTCTTGCAAAAATTCAACAGTGAAGATGTTTCTGTAGAAAGACAAGGAGTGGTTTTACAAAATGGAATGCAGTCTTTGGCGGAAATAGCGGGTCCTCGTTGGAAGGAACTACCTGAACATGAAAAAGAAGTTTATCAAGAAATGGCACGTCAGGATAAAGCAAACAAGAGATATCGACCTGCTCGTAATGATAGGATGGACTGCACTGGAGAGTACATTTCAAAACGTGTGGATACTGTTAGCTTGAATGAGAAACGACGGAAGGAGGAGAGAGAAGAGGTGAAGAGAGGATGGCTGCCTGGGCGAGCTGTTTGTGATGAAAGATTCTACATGATTGGTTTCATGTCATGTTACGATCTCCCTGATGAAGGATTCCTCCCTTGTGAAATTGGTGCCGTGGAGTATTCCCTCAGTGGGGGAATCTTACGAAAGATGCATTACTTTATCAAACCAGgtGAAATTAAAGTTGGCCTTCGATATACAGCCATGAGCTCAAGTGAGAGAACTCATAAGATACCAGTAGAGGGTTTGGCTAAGAAAGATGACACATATCGCAAGATCTGGCTGGACCTCTTGCGCTTTGTCAATCCAGAACAGACTGCCATTTTCCCTCCTGTGTATTCCAGGAtttcagaaacaaaacaaactgagTACTGTTTGCAGTGGTTGGCTCGAAATGCAGaAATGCCAAATAAACTGAAGAAGGTGTATGAGCTAGAGGGACTAGTGTGTGATTTACATGCTCATTTTACGGCTGCTTCTGGAAGTACCTTAGGAATTTCAAAATCAAAGGCCACAGAGCTTCTCTCAAGTACCATTTTTGACTATGAACCTAATTCAAGGTGTGACTGGCATGAAAAAGAAGAGGTTAAATTTTGTGCCCTGGGAACAGTCCTCCGCTACTGctACTGTATGTCAGATTTCCTATGCTCGGTTTACGGGATCCCCTTGACTCCAAACCATCTTCCCGAGAGACCAGATGGAATATTCTGCACTGTAATCAAGCCAGCAGAGAGTAGCCGGTCTTTGAAGGAAGAAACTCAGCCTGGGATGAGAAGGCCCATACAGGATAATGGACCTTTTGCCTCGAGAGATTATCGTTACTACAATCAAGGAGCTAGTAGTCCCACTTCTAGTAGCAATCCGGGTGCCTATACTCGCTCGGGACCCACTTATGATCAACAGAGTCTGTACAGTGCAGAAGATGATGACACTGAATGTAACAGCAGAGCACAAGCACCACCGCAGGCTGCAGCCTGGCAGGTGTCTCAACGATCATCTCAACCTCCACAACCTGCATCAGGCTTTGGAGTGGGGAGAGGACGGGGTAGAGGGCGAGGTAGTCATCTCAATCAACCACTTCGACGACCAAACCTCCCTGTTATGTCCACAGGTGGGGCTGCAGATACATCTTGGAGCGGCATTGCTGCTTCTGAGCAGCCATCAGCTTCCACAGATAATATTCCAGAATGGGCCAGAGCAGATTCCCAATCCCGCCCTGCTGGACGAGGGGCATTAAGAGCCCCTGCCACCAGACCGAAGGTTTATGCTGGAGCAATGAATCCCCCAGCCCCAGGACACGCCCCAATGCCTCCATCTGCTTGGCAACAGCAGGCCATGTGGCAAGGGGGAAGTGGCATAGCTTCACAGATGAATTCTATTAATCTGAATGGCTAA

Transcript

ENSOFVT00000006120

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91Z92	Beta-1,3-galactosyltransferase 6 OS=Mus musculus OX=10090 GN=B3galt6 PE=2 SV=1
Q96L58	Beta-1,3-galactosyltransferase 6 OS=Homo sapiens OX=9606 GN=B3GALT6 PE=1 SV=2
Q08D62	Protein maelstrom homolog OS=Xenopus tropicalis OX=8364 GN=mael PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006657 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01762 all species →	Galactosyl_T	Galactosyltransferase	Family	Interproscan
PF13017 all species →	Maelstrom	piRNA pathway germ-plasm component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039259 all species →	Family	Protein maelstrom	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR002659 all species →	Family	Glycosyl transferase, family 31	Interproscan
IPR024970 all species →	Domain	Maelstrom domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21358 all species →	PROTEIN MAELSTROM HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007140 all species →	Biological Process	male meiotic nuclear division	Interproscan
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0060964 all species →	Biological Process	regulation of miRNA-mediated gene silencing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000005696.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cyphastrea salae tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cyphastrea salae, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →