Gene detail

Detailed information of ENSOFVP00000006108.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020611077.1, structural maintenance of chromosomes protein 4-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000006605

ATGGACATGGAACATCCAAATACCGCAACCGAGACTAGAACAGCTCGTCTAATGATTACAAAAATAGTAAATGACAACTTTAAGTCCTACGCGGGAACTCAAGAATTGGGGCCATTTCATAAGAACTTCTCTTCCATTGTTGGCCCCAACGGCAGTGGAAAATCCAATGTCATTGATGCTATGTTGTTTGTATTTGGTTACCGTTCAAAAATGATTCGAACAAAGAAAGTTTCTCAATTGATACACAACTCTGAAAACCATCAAAATGTTCAGAGCTGCACAGTGTCAGTGCATTTTCAGAAAATAATTGATTTGCCAGGAGATGACTATGAAGTTGTGGCAGAAAGTCAATTTACTGTTTCACGCACAGCACGCAAAGACAATAGTTCAGACTATCATGTTAATTGTCGCAAAGTTCCATTTAAGGAGGTGGCTAAACTTCTTAAAGATTGTGGCATTGATTTAGATCACAACAGATTTCTCATTTTACAGGGAGAAGTTGAACAGATATCCATGATGAAACCAAAAGCGCAATCTGAGCATGAAGAAGGGATGCTGGAGTACTTAGAAGACATTATTGGATCAAGTCGCTTCAAAGAGCCAATTGAACAGTTAACTAATGAGGTTGAAAACTTAAATGAAGCTCGAGGAGAAAAGTTGAACAGAGTGAAAGCTGTAGAAAAAGAGAAAGATGAACTTGAGGGATCCAAGAACGAAGCTGTGGAATATCTCAACATGGAGAATGccattacaaaacaaagaaatgtcCTATTTCAGAGATACATATACGAGTGCACCTTGAATGAAGAGAAGGCAGCAGAAAAGAGGGATGAGATAAAAAAGGGATTTGATGAATTAAAGAAGGAACTTGCTGATTTTACAGAGAAAAAGAAAGCCCAGATGAAGGAACACAAGAAAGCATCAAAGAAATATGAAGAACTTGCTAAAGTAGCTGAGGAGACCAAAAAAAACTTTGCAGCGTATGAGAGAGATGACCTGAAACTTCGGGAGGATTATAAACacttaaaacaaaatcacaaaAAGATGCAGAAAAATCTTGAGAAGGAAAAATGCAAGCTGGAAGAACTTCAGAATGTTCCTGAGAAAAGCAAAAATGAGCTGGAAAAACTggaggaaaagaaaaatgatCTGGAGGTAAAACGAAAAGCAGAAGAAGAGAAGCTTGCAGAAGTTATGGCAGGCTTAAAGAGTGAAACTGAGGGTCTCCAAACAGAAAAGGAGGCAAAAGAAACAGAGTTATTAGGCTGGAACAAGGTTGTCAATGAAGCTAAGTCAAAGATGGATGTGGCTAAGAGTGAGGTAGAACTATTTAAAAGTAAGTATGAAACAGCTTTGAACCAGCTCAAGGATGCCAAAGACAACTTGGAAAAGACAAGGGAAACGCGAACACATAGAAAGAGTGAAATACAGTCGTTACAAGATGAAATTCCAGAGTTGAAGAATAGGTTAAAAAAGGCAGAAGCTGATTTGGTCAAGGCTGTGGAAGGAGAAAAGAAAGCTTCTGATGAGctTCGAAACATAAGAACCAAAGTCGAGGAAGCAAGAAGTTCCCTTCAAGCTTCACATAGCAGAGGTAGAGTGTTGGAGGCCCTTATGGAGCAAAAGGCAACTGGAAAGATTAAAGGAATTTTTGGTCGTCTGgGAGATCTTGGTGCCATAGATGATAAATATGATGTAGCGATAAGCACAGCATGTGGAGCTCTGGATAACATTGTTTGTGACAGTATTGACACTGCTCAGAGGTGTATCACCTTCCTCAAACACAATAACATTGGAGCTGCTACATTTATTGGCCTTGACAAGGTGGAGAAATGGAGGAAAGATGCATCCTCAAAAATTCAAACGCCAGAGAATGTGCCACGGCTATACGACCTGGTCCATGTAAAAGACGATCAAATACGCACAGCTTTCTTCTTTGCTCTGAGAAACACACTAGTTGCAGATGACCTCAAACAAGCCACAAACATTGCCTTTCAGGGATCTAAAAGATGGCGTGTAGTGACATTACAAGGTGAACTCATCGATCAATCAGGTACAATGAGTGGTGGTGGAAACAAAGTTGTCAAGGGAAGAATGGGATCTTCCATAAGATCAGATGTAAGTCCTGATCAGCTGGAAGCCATGGAGAAAACCCTGGAGAAAGAGACAAAAGCAGCTGAGGTA

Transcript

ENSOFVT00000006605

GCTTCGGAGCAGGGAGGCGAACAGACGATGGACATGGAACATCCAAATACCGCAACCGAGACTAGAACAGCTCGTCTAATGATTACAAAAATAGTAAATGACAACTTTAAGTCCTACGCGGGAACTCAAGAATTGGGGCCATTTCATAAGAACTTCTCTTCCATTGTTGGCCCCAACGGCAGTGGAAAATCCAATGTCATTGATGCTATGTTGTTTGTATTTGGTTACCGTTCAAAAATGATTCGAACAAAGAAAGTTTCTCAATTGATACACAACTCTGAAAACCATCAAAATGTTCAGAGCTGCACAGTGTCAGTGCATTTTCAGAAAATAATTGATTTGCCAGGAGATGACTATGAAGTTGTGGCAGAAAGTCAATTTACTGTTTCACGCACAGCACGCAAAGACAATAGTTCAGACTATCATGTTAATTGTCGCAAAGTTCCATTTAAGGAGGTGGCTAAACTTCTTAAAGATTGTGGCATTGATTTAGATCACAACAGATTTCTCATTTTACAGGGAGAAGTTGAACAGATATCCATGATGAAACCAAAAGCGCAATCTGAGCATGAAGAAGGGATGCTGGAGTACTTAGAAGACATTATTGGATCAAGTCGCTTCAAAGAGCCAATTGAACAGTTAACTAATGAGGTTGAAAACTTAAATGAAGCTCGAGGAGAAAAGTTGAACAGAGTGAAAGCTGTAGAAAAAGAGAAAGATGAACTTGAGGGATCCAAGAACGAAGCTGTGGAATATCTCAACATGGAGAATGccattacaaaacaaagaaatgtcCTATTTCAGAGATACATATACGAGTGCACCTTGAATGAAGAGAAGGCAGCAGAAAAGAGGGATGAGATAAAAAAGGGATTTGATGAATTAAAGAAGGAACTTGCTGATTTTACAGAGAAAAAGAAAGCCCAGATGAAGGAACACAAGAAAGCATCAAAGAAATATGAAGAACTTGCTAAAGTAGCTGAGGAGACCAAAAAAAACTTTGCAGCGTATGAGAGAGATGACCTGAAACTTCGGGAGGATTATAAACacttaaaacaaaatcacaaaAAGATGCAGAAAAATCTTGAGAAGGAAAAATGCAAGCTGGAAGAACTTCAGAATGTTCCTGAGAAAAGCAAAAATGAGCTGGAAAAACTggaggaaaagaaaaatgatCTGGAGGTAAAACGAAAAGCAGAAGAAGAGAAGCTTGCAGAAGTTATGGCAGGCTTAAAGAGTGAAACTGAGGGTCTCCAAACAGAAAAGGAGGCAAAAGAAACAGAGTTATTAGGCTGGAACAAGGTTGTCAATGAAGCTAAGTCAAAGATGGATGTGGCTAAGAGTGAGGTAGAACTATTTAAAAGTAAGTATGAAACAGCTTTGAACCAGCTCAAGGATGCCAAAGACAACTTGGAAAAGACAAGGGAAACGCGAACACATAGAAAGAGTGAAATACAGTCGTTACAAGATGAAATTCCAGAGTTGAAGAATAGGTTAAAAAAGGCAGAAGCTGATTTGGTCAAGGCTGTGGAAGGAGAAAAGAAAGCTTCTGATGAGctTCGAAACATAAGAACCAAAGTCGAGGAAGCAAGAAGTTCCCTTCAAGCTTCACATAGCAGAGGTAGAGTGTTGGAGGCCCTTATGGAGCAAAAGGCAACTGGAAAGATTAAAGGAATTTTTGGTCGTCTGgGAGATCTTGGTGCCATAGATGATAAATATGATGTAGCGATAAGCACAGCATGTGGAGCTCTGGATAACATTGTTTGTGACAGTATTGACACTGCTCAGAGGTGTATCACCTTCCTCAAACACAATAACATTGGAGCTGCTACATTTATTGGCCTTGACAAGGTGGAGAAATGGAGGAAAGATGCATCCTCAAAAATTCAAACGCCAGAGAATGTGCCACGGCTATACGACCTGGTCCATGTAAAAGACGATCAAATACGCACAGCTTTCTTCTTTGCTCTGAGAAACACACTAGTTGCAGATGACCTCAAACAAGCCACAAACATTGCCTTTCAGGGATCTAAAAGATGGCGTGTAGTGACATTACAAGGTGAACTCATCGATCAATCAGGTACAATGAGTGGTGGTGGAAACAAAGTTGTCAAGGGAAGAATGGGATCTTCCATAAGATCAGATGTAAGTCCTGATCAGCTGGAAGCCATGGAGAAAACCCTGGAGAAAGAGACAAAAGCAGCTGAGGTACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CG47	Structural maintenance of chromosomes protein 4 OS=Mus musculus OX=10090 GN=Smc4 PE=1 SV=1
Q9ERA5	Structural maintenance of chromosomes protein 4 (Fragment) OS=Microtus arvalis OX=47230 GN=SMC4 PE=2 SV=1
Q9NTJ3	Structural maintenance of chromosomes protein 4 OS=Homo sapiens OX=9606 GN=SMC4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002657 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0000799 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000006108.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.