Gene detail

Detailed information of ENSOFVP00000006261.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020628298.1, lysosome-associated membrane glycoprotein 3-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000006781

AGGTCCCGCAACCTTGCACAGAGCGATATCTGCGTTCACTTCAATTCGAAGAAGATCATGGCTTTTCTCTACCGTGCCTTTGCTGTGTTTGTTCTTTATTCAGTTCTTGGTGAGCGGACAAATGTTGCAGCTGTACGCGAAGCCACAGCCATACGTGTTGTTCCAAGTCCCACAGTTATGAAGAATGGTAGCAGCCTTTCAAGTGCAACATCTCACCACATGACTACTACACCTTCTCATAACATGTCATCTGCCATGCCTCAGAACACGACCGTCACACCTCATAACACAACGATCGTGCCACATAACTCGACAATCGTGCCACATAACACCACAATCATGCCACATAACACGACCATCATACCACATAACACGACGATCGTGCCACATAACACGACGATCGTGCCACATAACACCACAATCATGCCACATAACACGACGATCGTGCCACATAACACCACAATCATGCCACATAACACAACGATCATGCCACATAACAGCACTATCATGCCATCGTCAGCACACACTGTGATGCCAACATCTTCCATGTATccaacaacaacaccaacacCAGCACCAAAACCAGGCAAGTTCTCGGTAAAGAAGAATGGTATAGTCTGCTTGTTTGCCTACATGGCAGCCAAATTTGACATCATGATTGTTTCAACGAAGCTGAGCCTTGAGCTACCAACCAATGCTACTGTGAAAGGAAAATGTGATAAAGATGTCCAAGAGCCTTACATTAGCTTGAACTGGCAGGCAATGGAAGGTTACAGCTGGAATTTCACCATGCATTTTGTCAAAGTAGAAAGCGAAACTTTGACGAAATCCACTGAAGGTCGCTGGGCAGCTGCCAACTTGACACTTTCTCTGACAAATAGTAGCAGTGATGAGCCGGTCTACACTTTCCATTCTGCAACTGGCCCACTTACACAGCTGTCTGCTGATTATGGTTATGCTTATGAATGCCTGACAGATCCCATCAACTTCAAACTTAATGCCAACAATTCCAATGTTAATGTTACCTTAACAAAGATTGACTTTAAGCCTTTTGATGTACGTGATGGGCATCTTGGCAATGTGGAGAAATGCTACCCAAACCCGccaacaacaccaacaacaccaacaaaaaaacCAGAAAGTCATGCGGTGGCAATTGCTGTTGGTTGTTCTTTGGCTGCACTTGTTATTATCATTGGCATCGGTTACATGATCGGAAGACGCCGCAGGAGAAACCAAGCGGCTGGATATCGCAAGCTGTGAATATGCAGCACCACTGTCGGATGGAGCAAGCGTGGAAATCTGTGATCTTGGCTGCAAGGACAAAGCAGCAAATAAACTTGCAACACAGTTAGTAGTTTGTAGAAGAACATAATCAGGCATATTTTTGAGTAACTGTTTTTGTAATAATGAGTGATTTCAGATGATTAGCAGTCCAAACTAAACATTATCTTTTTGTTGTACTGTATGATTGACTTGGGTAATGgaatttttgtgtttttcctTGGTTATTTGAGATGCTATCATTGCTATCATCATCATTTCTGTATGTGGCAGTAGTTACATGAGAGAGTCGAGTTTCTACTTCATTCCATCATTTGTTGTGGcagaaaaaaagtcaaattttcaatcaacccAAATTGTCAAAATCTAAACCATAACAGTACAAAATATCCAGTGGACTGTTGTTCATCGTGCAGTGGTTTTCACTTGTGATAATCtggggaaattttttttttatcagaagGCATATCAGTTAACCACTTGAGGAGCAACTTGCTAGATGAAAATTGTTCCTGGGATGTGATTAGTTGTAGATCACTAAAGCAGTGCTAGGATTGATTCTAACAGGATTATTGCCAGTTTAGCAATTAAATGACACTCACAGATACAAACCACTCAAGGGGAGGGGGAGCTCATTGTACCTTTTAGGGGCTAGAAAAGTGGTTGTGGTACCCCTAAGGGTATTCAGGAATTTTTGCAGTACCTCTAAGGGTATTGAGTGAACAAAAATACAGCATGAGattatgttttgttttagaattggtgcTGATCTCATTGGGTGAAAAAATATCAAGCCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002080 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21222 all species →	Lamp2_2nd	Lysosome-associated membrane glycoprotein 2, transmembrane segment	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048524 all species →	Domain	Lysosome-associated membrane glycoprotein 2-like, transmembrane domain	Interproscan
IPR002000 all species →	Family	Lysosome-associated membrane glycoprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11506 all species →	LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0072594 all species →	Biological Process	establishment of protein localization to organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06528	LAMP1_2, CD107; lysosomal-associated membrane protein 1/2	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.