Gene detail

Detailed information of ENSOFVP00000006305.1 in Cyphastrea salae

Genomic Location: :...
NR annotation: PFX29707.1, Retrovirus-related Pol polyprotein [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSOFVT00000006830

ATGCCGTCAATAAAGATAGACGATTTAACGAGTGTGAAACCCTTCGATCCACATGGTGAACCTTCAGGCGTTGGAAGGCGATGGCAGCGTTGGTTGAAAAGTTTCTCGGTTTATGCCGACAGCAAGGGCTTGCTCATCCAAGCGGACAAAGCGAATAACAAAATCCAGAGGAGAGCTTTACTCCTTCATTCGGCCGGCGAAGCTGTTCAGGAAATTTTCGAAACGTTAGCTGACACAGGCGAGGCGAAAGACTACGAAAAAGCAGTGAAGGCTTTGAACGATTACTTCATTCCAAAGGTAAATTCGACATACCAAAACCACTTGCTCCGCAGCATGGAACAACAGGACGGCGAAACTGTGGCTCAGTTCGTTACGCGATTGAGGCAAGTGGTCAAAGACTGTGACTACGTCGTGCAGCGATGTAAATCACATGAATTAAGGAAGAAACTACTGGAAAAGGGTGAGAAATTAACCTTAGAGCTGTTGCTTTCAACGGCAGCAAATCACGAGCGAGTTCAATCACAGCTGGAAAATATGGAAGGAAACAGGGATGTGAATTTTGTCCGTGACAAGCAGGAAGACAAAGGGAAGGAGCCTGTCAAGCGAGCATGCTACATTTTGGACGAGACCCTGAGTGCCCCGCAAAAGGAAAAACTTGCCATAACCAAACCTCCCAAACCTAGACGGGAAGAGAAGACAAAAGGAAAGGAAACAAAGAAGTCAGTCAGGTATGTTGGAAGTGAGagagatgaagatgaatatGCTTTTACTGTGACTTCTGCTACATCACCTGAGAAAATAGATGTGACTGTGGGTGGAGTTGCAGTTACAATGTTGATTGATTCCGGTGCGAGCACTAATGTGATTGACAAAAATCTGTGGTCAAAGTTAAAGCAAGACAAGATTAAGTGTGTGTTGAGAAAGTGTGATAAGAAGCTTTATGCGTATGGCAGTAAACAGCCACTGGACGTTCTAGGAACATTCAAAGCACTAGCAAGAGTGGAGGGGAGAGAAACCGAAGCCGAATTTGTCGTTATTAATGGCGAAGGGGTGGCACTGCTTGGAAGGGAAACTGCCATACAGCTAGGCGTGTTGAAATTAGGAAACCAGATCTGCAATGTGACATCTAATGAGACAATCATGTCTGATTACAAAGAAATCTTTAAAGGTGTGGGAAAGTTAAAAGATTACCAACTTAAGTTGCATGTGAATCCGGATGTACCCCCGGTGGCACAGCCAGTCAGGCGTACCCCATTTAGTCTTCGAGGCAAGGTTAAGGAGAAGATTGAAGAACTAGTAACCACGGACATAATTGAACCAGTAGAGGGCCCAACCCCGTGGGTTAGTCCAGTTGTAGTAGTCCCAAAGCAGAATGACGAAATACGTCTTTGTGTGGACATGCGAAGAGCTAATGAAGCCATTATCAGAGAACGTTATCCCATACCCACAGTGGACGAAGTGCTCCAAAGCCTCAACCAAAGCACGGTGTTCAGGAAACTGGATTTAAAATGGGGCTACCACCAATTAGAACTCCATCCAGATTCCAGAAGCATCACAACGTTCACCACACACTGTGGTCTCTATCAGTACAAGCGCCTCATGTTTGGGATAAGCTCAGCTCCCGAAGTGTACCAGCATGTCATTCAGCAATCATTACAAGGCTGTGAAGGTGTTGCTAACATCTCAGATGATATTATTATTCATGggaagaacactgaagaaaacGACAGAAGATTGCAGCGAGTATTGGAAAGGCTGAAAGAGAAGAATCTCACGCTGAATGCAGAGAAGTGCAAGTTCCACATGACCCAGATGGTCTTCATGGGGCTGGTGTTAAGCGACAAAGGTATTGGTCCTGCCGAAGACAAGGTAAAGGCGATCGTTGATGCAAGAGAACCGCAGAGTGCATCAGAAGTCAGAAGCTTTCTGGGACTGGCAAACTACAATGCCCGTTTCATCCCGAACTTCGCTACAGTCGCGGAGCCATTGCGAAGATTGACCAAAAAGGGTGTTCGTTTCGAGTTTGGAGAAGAGCAGAAGAATGCATTTAATGAGCTTAAGAGGAGGCTATCTAGTGCAGAAACTCTTGGTTACTTTGATAACGATGCCAAGACACTAATCATAGCAGACGCAAGTCCGGTAGGGCTCGGTGCAATCCTCATCCAAGACCAGCAAGGCAGGAAAAGAGTCATTAGTTACGCAAGCAAGAGTCTAAGCGCTGTGGAAAAGCGTTATTCGCAAACAGAAAAGAAGCCTTGGCTGTTGTAG

Transcript

ENSOFVT00000006830

Protein

Uniprot

Uniprot term	Description
P31843	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan