Genomic Location: chr11:18373267...18385919
NR annotation: KAJ7381400.1, mitochondrial membrane protein [Desmophyllum pertusum]
Species Cyphastrea salae · all data for this species · gene families
| CDS |
| ENSOFVT00000007346 |
| Transcript |
| ENSOFVT00000007346 |
| Protein |
| ENSOFVP00000006756.1 |
| UniProt accession | Description |
|---|---|
| Q9Y3D6 | Mitochondrial fission 1 protein OS=Homo sapiens OX=9606 GN=FIS1 PE=1 SV=2 |
| Q3T0I5 | Mitochondrial fission 1 protein OS=Bos taurus OX=9913 GN=FIS1 PE=2 SV=1 |
| P84817 | Mitochondrial fission 1 protein OS=Rattus norvegicus OX=10116 GN=Fis1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006170 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14853 all species → | Fis1_TPR_C | Fis1 C-terminal tetratricopeptide repeat | Repeat | Interproscan |
| PF14852 all species → | Fis1_TPR_N | Fis1 N-terminal tetratricopeptide repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033745 all species → | Domain | Mitochondria fission protein Fis1, cytosolic domain | Interproscan |
| IPR028061 all species → | Repeat | Fis1, C-terminal tetratricopeptide repeat | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR016543 all species → | Family | Mitochondria fission 1 protein | Interproscan |
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR028058 all species → | Repeat | Fis1, N-terminal tetratricopeptide repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13247 all species → | TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000266 all species → | Biological Process | mitochondrial fission | Interproscan |
| GO:0000422 all species → | Biological Process | autophagy of mitochondrion | Interproscan |
| GO:0005779 all species → | Cellular Component | obsolete integral component of peroxisomal membrane | Interproscan |
| GO:0016559 all species → | Biological Process | peroxisome fission | Interproscan |
| GO:0031307 all species → | Cellular Component | obsolete integral component of mitochondrial outer membrane | Interproscan |
| GO:0043653 all species → | Biological Process | mitochondrial fragmentation involved in apoptotic process | Interproscan |
ENSOFVP00000006756.1.Genes whose expression across the transcriptome samples of Cyphastrea salae tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cyphastrea salae, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
